Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0067 ATGTCGAAGGATACAGACCCTGCTAATCTATCGCGCACCTTCAAGTACCTATTAGCTACTCAGTTCTTGTCAAGGGGAATTCCATTTATATTCAATACATGGATTGTCAGGCATCTTACACAGGAGGACTATGCGCTCTATGCGGTGCAATTTCATCTGTTTGTCACATGTGTCTTATTTCTTAGCCGGGAGGGCTTCCGAAGAGCATGTATGCGGATGGACATAAGACGTGATGGCACTTCAATGGAAGAAGATGTTGTGAAGCTAATGAAAGTAGTGTGGATGAGTCTCCCGCTTGGAATATTTATTACAATTGTTGCTTGCCTTCTTGTCTTCTGGTGGCAAGACATAAGTTATTCTACTCCACATGGGCAAGCTATCTTGATCAATGGTTGTGCTTGCATTTTGGAGCTTTTGGCTGAGCCTTTGTATATTCTTTCACAGAACTTGGTGTTGCTTGAATTACGGTTGATGGTTGAGACACTAGCTACTCTCTCACGGTGCTTGACGATGTACTTCCTAATTGTGAAGCAAACTGGAATGGAAAAATCAATCATATTTGCTTTGTCACAGTCTGCATATGGAGCCTGCTTATTTCTAGGTTATTGGGGCTATATGGTTCTTTTACGCAAATTTAGATATTCTTACCTTTTCCCATTCAGAGAAAGGAAAGTGATTGGTTTTGACCGACAGCTGTCCAAAATGTGTATGCTATTTACCTTTCAATCCTATCGGAAGTTGATCCTTCAAGAAGGAGAAAAAATGGTGCTTGTGTGGTTGGACACACCATATAATCAAGCTGTATATGGCCTTGTGGACAAATTAGGTAGCTTAGTGGTGAGACTTCTCTTTTTACCTTTTGAAGAAAGTTCATATACAACATTTGCAAGGTTTGCTTCAGGACAATACCCAGGAAAAAGCAAGAAATTAGGAAACTGCTTGACAGAGTCCCTGAAGCTAGTTTTGTTGATTGGCCTTGTTTTTATTGCATTTGGTCCAAGTTATTCTTATTCACTCATTAGATTGTTGTACGGCCAAAAATGGAGTGATGGAGAAGCAGCAACTGCCCTCCGCTATTATTGCTTTTATGTCATTGTTTTGGCTATGAATGGAACCTCTGAAGCCTTTATGCATGCAGTTGCAACAGAGAGCCAACTCAAGCGATCAAATGATTCACTGCTTGTATTCTCTTTGATCTATATAGCTTTGAACGTCTTACTAATTAAGTTATCTGGGGCAGTTGGCTTGATTATTGCAAATTCTCTGAATATGACTTTGAGGATTTTATACTCTGCAATATTCATAAAGAATTACTTCAAGGGATCTTCTTCCTTTTCTTTCTGTGACTGCTTGCCTTCAGGATGGATTATTCTGTTACTTTCAGGTGTAATCACTCTCATCTCTGAGAATGTATTTCTGGACCAAGATAATTTCTGGCCATCATTTATGATCCATTTCTCCGTTGGGCTGGCTTGCTTCTGTGTGTCAGCATATGTGATCTATTGTCGGGAAAAACCTTTCATCAAAAGAATTACTCGCTTTCGTGATCACTCGGACTGA 1560 0.3994 MSKDTDPANLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLFVTCVLFLSREGFRRACMRMDIRRDGTSMEEDVVKLMKVVWMSLPLGIFITIVACLLVFWWQDISYSTPHGQAILINGCACILELLAEPLYILSQNLVLLELRLMVETLATLSRCLTMYFLIVKQTGMEKSIIFALSQSAYGACLFLGYWGYMVLLRKFRYSYLFPFRERKVIGFDRQLSKMCMLFTFQSYRKLILQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLLFLPFEESSYTTFARFASGQYPGKSKKLGNCLTESLKLVLLIGLVFIAFGPSYSYSLIRLLYGQKWSDGEAATALRYYCFYVIVLAMNGTSEAFMHAVATESQLKRSNDSLLVFSLIYIALNVLLIKLSGAVGLIIANSLNMTLRILYSAIFIKNYFKGSSSFSFCDCLPSGWIILLLSGVITLISENVFLDQDNFWPSFMIHFSVGLACFCVSAYVIYCREKPFIKRITRFRDHSD* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0067 519 CDD MATE_rft1 9 441 - -
Lja3g0067 519 Pfam Rft protein 13 512 IPR007594 GO:0006488|GO:0016021
Lja3g0067 519 PANTHER ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED 5 518 IPR007594 GO:0006488|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0067 Lja-Chr3 753157 762228 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0067 K06316 - gmx:100817452 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0067 3 753157 762228 Lja3g0067 3 753157 762228 ECH