Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0066 ATGGCTCTCCTCAGTCTCCCGCAATTTCCCTCCCATTTTCCCTCACTTTCCTCCTTTCCAAACACCCGCATCTCTCCAACTCGCTGCCGTTGCTCAACCGCCACCGCCATTCTCTGGTTCAAGCACGATCTCCGAACCGATGACCACCCTGGACTCCTCGCCGCCGCCTCCAACTTTCCATCTCTCGTCCCTCTCTACGTCTTCGACCACCGTATTCTCTCACGTTTTTCCGATGAAACGCTGGAACTGGTTCTCTTCGCAGTTCACGATTTGAGGAAGTCGTTGCAGGATCGTGGTTCTGACCTAATGGTTAGATTCGGCAATGCTGAGAATGTGATTCAGCAACTTGCAATGGAGGTTAAGGCTACCTGTGTGTTTGCGGAACAAGAGGTAGAGTATGAACTGCGCTTCCTCATCGATGTTGTGAGCCAGCATTTGAAATCGGTCTCGGTTCCAGAAGGTTCTCCAGTGATTGAATTGTGGAACACTCCGTTTTATGATGTAAAGGTTCTGCAAGATCTTCCTGCATCCTATGATGACTTTAAGAAACTTCGACTCCCAGTAACTGAACCGATTCAGCTGTCAAAATTACCTGGTGCAGAAATGGAACTCGACTGGGGTGCTCTTCCTGTATATGATGATATAAAGGAATTAATGAATAAAAACTCGTGGAAATCAGGAGAGAATTGGAAATTAATCAAGGAGACATCAGCTGAAACGTTATTACGCAGAGATATATTGAAATCGAGTGAGAGCAGTGAAAGAAGTTATAGCTTTAGACAGATACAGTCTAGGGAACCAAATGAATCTGTTTTTGTGACACGAAAAGGAAATGTTGTGGGAGGAGGAACAAATAATGCACTGAATGCATTGGCTGCATATTTGAGATATTTAGAGGGTACAGCTCGTAATGACTGGCAAGAGGTACATGAAAAAGTCCGTTCTTATGAAAGTCGGAATGGAGCATCATTTATTGGACTCTTTGGTCCTGCCTTATCTCTTGGCATTATATCAAGAAGAAGAGTATATTATGAAGCTATCAAATATGAGAAAGAACGGAATGCAGGATTCTTATCTCCCTTTGGATATTCAGCTGTCACAATCGCAGCAGCAATTGATGCTGTGTGCTCAAAGGAGTGGTATTGGCTTATGGCATTGAGAAATCATTTAAAGAATGATGGGATACACTCAACACGTATATGGAGATGGAATGGATTTCTTGTTCAGTATACACTTGCTGGTGAAGATGGTCCTGCAGTTCTTCTTGTACATGGTTTTGGTGCCTTCGGGGAGCATTACCGAGATAACATACATGCTTTAGCTGGAGCTTGGAATCGAGTATGGACTATTACATTGTTAGGATTTGGCGAATCAGAAAAGCCAAATATTGTATATACTGAACTATTGTGGGCTGAACTATTAAGAGATTTTATTGTTGATGTTGTGGGTGAACCGGTCCATCTTGTTGGCAACTCAATTGGTGGTTATTTTGTTGCTATTGTTGCTCGCATTTGGAGTGTTTTGATCAAATCAGCTGTCTTGATCAACAGTGCTGGCAATATCATCCCCACATATACATCCATACCATTGCCCAGAGACAGACAAACATCAGGGGCTTCCTGGTTGGGTTCTCGAATTCTTCTATTCTACTTGAGGCTAAGAATTCAAGAAATAGTTAAGAAATGCTACCCAACTAAGGTTGAAAGAGCAGATCATTGGCTCATAAATGAAATGCTAAGAGCATCATATGATCCTGGTGTAGATGTGGTCTTGGAAAGCATCTTTAGCTTTAACCTTTCCATACCTCTTAACTATCTTCTTGAAGATGTCAAGGAAAAGGTTCTAATTATACAGGGGATGAAAGATCCACTTTCTGACTCCAATGCCAGGGTGGCCATGCTTAAAGAGCATTGTCATGGTGTTTCAATTAAGGAATTAGATGCTGGCCATTGTCCGCATGATGAGGTGCCGGAGCGAGTGAATATTATCATTCATGATTGGATACTTGGTGTTGAAAGTAACACTTTGGCAGGGTGTCTAGTTTAA 2046 0.4257 MALLSLPQFPSHFPSLSSFPNTRISPTRCRCSTATAILWFKHDLRTDDHPGLLAAASNFPSLVPLYVFDHRILSRFSDETLELVLFAVHDLRKSLQDRGSDLMVRFGNAENVIQQLAMEVKATCVFAEQEVEYELRFLIDVVSQHLKSVSVPEGSPVIELWNTPFYDVKVLQDLPASYDDFKKLRLPVTEPIQLSKLPGAEMELDWGALPVYDDIKELMNKNSWKSGENWKLIKETSAETLLRRDILKSSESSERSYSFRQIQSREPNESVFVTRKGNVVGGGTNNALNALAAYLRYLEGTARNDWQEVHEKVRSYESRNGASFIGLFGPALSLGIISRRRVYYEAIKYEKERNAGFLSPFGYSAVTIAAAIDAVCSKEWYWLMALRNHLKNDGIHSTRIWRWNGFLVQYTLAGEDGPAVLLVHGFGAFGEHYRDNIHALAGAWNRVWTITLLGFGESEKPNIVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYFVAIVARIWSVLIKSAVLINSAGNIIPTYTSIPLPRDRQTSGASWLGSRILLFYLRLRIQEIVKKCYPTKVERADHWLINEMLRASYDPGVDVVLESIFSFNLSIPLNYLLEDVKEKVLIIQGMKDPLSDSNARVAMLKEHCHGVSIKELDAGHCPHDEVPERVNIIIHDWILGVESNTLAGCLV* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0066 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 34 165 IPR006050 -
Lja3g0066 681 Gene3D alpha/beta hydrolase 390 669 IPR029058 -
Lja3g0066 681 SUPERFAMILY alpha/beta-Hydrolases 397 668 IPR029058 -
Lja3g0066 681 Pfam DNA photolyase 37 167 IPR006050 -
Lja3g0066 681 Gene3D HUPs 22 181 IPR014729 -
Lja3g0066 681 PANTHER DNA PHOTOLYASE 29 675 - -
Lja3g0066 681 Pfam Alpha/beta hydrolase family 420 660 IPR000073 -
Lja3g0066 681 Gene3D - 215 389 - -
Lja3g0066 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 35 211 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0066 Lja-Chr3 741199 745903 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0066 - - gmx:100813721 1060.83