Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0064 ATGGATCCAACCTCTCCAACTGGCCGAAAGCACAAGTTCACACCAAGAAAGCCCAAACCTCAGGCAAAGCCACCTAAAACTGAAGCGAGTGATGAACGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAGTGCTGCAGACAGAGCCACTCAAGCTCGCTTGCGTAGATGGAATAAGCAAATTGCAAGTCGCAAGCCTGAAGCTGACAGGAAATCTAGTGTGCAAGTTGCATTTGGTCCTGGTGGTTCATCACCTCCCCTGAGAACATTTGGTGCTGGTAAGGGTACAAATAGTGGTAAAAGCAGTGGATCAGCATCTAAATATTTTGCTGATGAGCAGAATGATTTAACACATTCTTCAAGTGCTATTGGAGACGAAAAGGATACTTCTGTCATAGATTTTACTGATGATGCCACTGATGCATCTACCTGCAAAATCAAAAAACCATATAAGGAGCCATGGGATTACAACTCTAACTACCCTATCACTCTTCCTTTGAGAAAGCCCAATTCTGGAGATCCAGAAATTCTTGATGAGGAAGAATTTGGGGAGAATGTGGAGTATGAAGATGAGGATGCTATTAATCCTGCTGCAGAACTCGGGCTCTTGGAGAAGAGTGACCAACAAAGGATGCTTTTTTTTGAGCTTCCTGCTCCTCTGCCTTTGGGAAAGAAATCAGTGAGTCTGAAGGGGAAGGAGAAAGCTACATCAACTACAGCAACAGGACAGCCCCCAAAACTAGGAACATGTGCCATGAAAGATTTGCCAAAGGGATTTCTGGGAAAAATGCTGATATACAAAAGTGGAGCAATCAAATTAAAACTCGGAGAAATCCTGTATGATGTGTCTCCAGGTTCAAAATGTGAATTTGCTCAAGATGTTGTGGCGATGAACACTGCACAGAAAGACTGCTGCGTTCTTGGGGAGCTTAGCAAAAAAGTTGTTGTAACTCCTGATCTTGATTCCCTTGAGCTGTAA 987 0.4326 MDPTSPTGRKHKFTPRKPKPQAKPPKTEASDEREEEEEEEEEEEEDSAADRATQARLRRWNKQIASRKPEADRKSSVQVAFGPGGSSPPLRTFGAGKGTNSGKSSGSASKYFADEQNDLTHSSSAIGDEKDTSVIDFTDDATDASTCKIKKPYKEPWDYNSNYPITLPLRKPNSGDPEILDEEEFGENVEYEDEDAINPAAELGLLEKSDQQRMLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGTCAMKDLPKGFLGKMLIYKSGAIKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSLEL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0064 328 Pfam RNA polymerase III RPC4 231 322 IPR007811 GO:0003677|GO:0005666|GO:0006383
Lja3g0064 328 MobiDBLite consensus disorder prediction 1 115 - -
Lja3g0064 328 MobiDBLite consensus disorder prediction 49 74 - -
Lja3g0064 328 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1 2 326 - -
Lja3g0064 328 Coils Coil 26 51 - -
Lja3g0064 328 MobiDBLite consensus disorder prediction 93 115 - -
Lja3g0064 328 PANTHER DNA-DIRECTED RNA POLYMERASE III 2 326 IPR007811 GO:0003677|GO:0005666|GO:0006383
Lja3g0064 328 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0064 Lja-Chr3 714091 718078 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0064 K03026 - gmx:100787575 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0064 3 714091 718078 Lja3g0064 3 714091 718078 ECH