Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0054 ATGGAAGTTAACCCGTTTAGAAGTTTCACGTTGACTAGAGATAATTATAACAAGTCTACAAACTCTCATCTTGAACATGCTCTACACATTCCCTTTCTCGGTCCTTCTTCCCCAGGAAGGGACAGTGGCAATAGATTAAAGGGTACACTTGTGATAATTATTGGTTCCATTATTTTCCTAATGTTAATAGTTGCAACACTGATTATAAACCAAAGCTATGATGAGCCCTTTGCGAAGCAGCAGATCAATCTCATCATGCCTAGAGGGGTTGCTGAGGGAGTTTCAGCCAAATCAAACACATTTCTTTCCCAGCAAGGTTCATATAATTGGACAAATGCCATGTTATCTTGGCAAAGAACAGCTTTTCATTTTCAACCTGAAAGGAATTGGATGAACGATCCTAATGGTCCATTGTTTCACATGGGATGGTACCATCTATTTTACCAATACAATCCTGATTCAGCTGTGTGGGGAAACATAACATGGGCTCATGCTGTATCCAGGGATTTGATCCAATGGCTCTACCTTCCCATTGCCTTGTTTCCAGATAGCTGGTTTGACATCAATGGTGTATGGTCAGGATCCGCCACCCTTTTGCCAGATGGCAAAATCATGATGCTCTACACAGGAGACACTAATCAACACGTGCAGGTGCAAAATCTCGCGTACCCCGCCAACCTATCTGATCCCCTCCTCCTTGATTGGGTCAAACATGCGGGTAACCCAATTTTAGCACCTCCACTGGGCATTGGTTCAAAGGATTTTCGTGACCCAACAACTGCATGGATCGGGCCAGATGAGAAATGGAGGGTCATTGTTGGGTCAAAGGTCAACAGAACAGGCCTTTCATTGGTTTATAAAACCAAAGATTTCACCCATTTTGAGCTCAATGACCACTATTTGCATCAAGTTCCGGGTACAGGTATGTGGGAGTGTGTGGACTTTTACCCAGTTTCGATAAACAAGCTGAATGGTTTGGACACATCGGTGAATGGTCCAGGAGTGAAGCATGTGTTAAAGGCTAGTTTGGATGACACTAAGGAGGATTATTTTTCACTTGGAACTTATTTCATTGAAAATGATACATGGGTGCCCGATACCCCGAATGCGGATGTGGGTATCGGGTTGAAGTTGGATTATGGGAGATACTATGCTTCAAAGACATTTTATGACCAACACAAACAGAGAAGGATCCTTTGGGGATGGATTAATGAATCAGATAGTGAAACCGCTGACTTAAAAAAGGGTTGGGCGTCTCTTCAGACAATTCCAAGAACAGTGGTGTTTGACCAGAAGACTGGAACTAATTTGCTTCAGTGGCCAGTGGAAGAAGTTGAGAGTTTAAGACTAAGCAATGCTATATTTGAAGGAATTGTTGTTAAACCTGGCTCAGTTGTGCCATTGGACATAGGCCCAGCAACACAGTTGGACATATTTGCTGAATTTGAAATCGAATTGCTGGCATCCGAAGGGGTTGAAAAGGATGTAGGATGCGGAGGAGGAGCTCATGAGAGAAGTGCATTGGGACCATTTGGCATTCTGGCTATTGCAGATGACCAACTTTCTGAACTCACACCAATTTATTTCCGCCTTTCTAGCACTGCCATTGGAACTTCAACCACTTTCTTCTGTGTTGATGAGACTAGGTCATCAAAAGCTCCTGATGTATCAAAGCTTGTTCATGGAAGCAAAGTTCCAGTCCTCAGTGATGAAAGATTATCAATGAGGATATTGGTGGACCATTCAATCATTGAGAGCTTTGGGCAAGGAGGGAGAACTGTTATCTCATCTAGAGTTTATCCAACAGAGGCAATATATGGAGCTGCAAGATTATTTCTCTTCAACAATGCAATAGGCATAAACATCAAGGTCTCGCTCACAGTTTGTGTAAGACCTGGATTTTCAGAACAAGCTAGTTTCCGACTCACGCGTAGAATCAGTGTAAGCGTGACAGGAGTTTGA 1962 0.4292 MEVNPFRSFTLTRDNYNKSTNSHLEHALHIPFLGPSSPGRDSGNRLKGTLVIIIGSIIFLMLIVATLIINQSYDEPFAKQQINLIMPRGVAEGVSAKSNTFLSQQGSYNWTNAMLSWQRTAFHFQPERNWMNDPNGPLFHMGWYHLFYQYNPDSAVWGNITWAHAVSRDLIQWLYLPIALFPDSWFDINGVWSGSATLLPDGKIMMLYTGDTNQHVQVQNLAYPANLSDPLLLDWVKHAGNPILAPPLGIGSKDFRDPTTAWIGPDEKWRVIVGSKVNRTGLSLVYKTKDFTHFELNDHYLHQVPGTGMWECVDFYPVSINKLNGLDTSVNGPGVKHVLKASLDDTKEDYFSLGTYFIENDTWVPDTPNADVGIGLKLDYGRYYASKTFYDQHKQRRILWGWINESDSETADLKKGWASLQTIPRTVVFDQKTGTNLLQWPVEEVESLRLSNAIFEGIVVKPGSVVPLDIGPATQLDIFAEFEIELLASEGVEKDVGCGGGAHERSALGPFGILAIADDQLSELTPIYFRLSSTAIGTSTTFFCVDETRSSKAPDVSKLVHGSKVPVLSDERLSMRILVDHSIIESFGQGGRTVISSRVYPTEAIYGAARLFLFNNAIGINIKVSLTVCVRPGFSEQASFRLTRRISVSVTGV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0054 653 SUPERFAMILY Concanavalin A-like lectins/glucanases 441 627 IPR013320 -
Lja3g0054 653 Pfam Beta-fructofuranosidase, N-terminal domain 79 115 IPR021792 GO:0004564
Lja3g0054 653 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 77 628 - -
Lja3g0054 653 SMART glyco_32 123 591 IPR001362 GO:0004553|GO:0005975
Lja3g0054 653 Pfam Glycosyl hydrolases family 32 N-terminal domain 123 441 IPR013148 -
Lja3g0054 653 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 77 628 - -
Lja3g0054 653 SUPERFAMILY Arabinanase/levansucrase/invertase 116 442 IPR023296 -
Lja3g0054 653 CDD GH32_Fruct1-like 129 427 - -
Lja3g0054 653 ProSitePatterns Glycosyl hydrolases family 32 active site. 123 136 IPR018053 GO:0004553|GO:0005975
Lja3g0054 653 Gene3D Glycosyl hydrolase domain; family 43 127 454 IPR023296 -
Lja3g0054 653 Pfam Glycosyl hydrolases family 32 C terminal 444 616 IPR013189 -
Lja3g0054 653 Gene3D - 455 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0054 Lja-Chr3 638969 646017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0054 46 628 Glycoside Hydrolase AT1G12240 58.444 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0054 K01193 - gmx:100814788 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0054 3 638969 646017 Lja3g0054 3 638969 646017 ECH