Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0049 ATGAATTTGATGGGTTTGGCACAAAGGTTGTTGGTGATGATAGTGGTGGGTACTCTGTTGTGTGTAACAGAGAGAAGCAGGGGAAATTCGCAGCAGCATAATTATGGGGAAGCATTGTCAAAGAGCATCTTGTTCTTTGAAGGGCAGAGGTCAGGGAAGTTGCCACCAACTCAGAGGATGACTTGGAGAAAGGACTCTGCGCTTCAAGATGGCTTTCAACTTGCTGATACTCGATTCTTTGATCAAGTTGACTTGGTTGGTGGTTACTACGATGCTGGTGACAATGTAAAATTCAACTTTCCAATGGCATTTTCAACAACCATGCTGGCCTGGAGTGTGATTGAGTTTGGAAAATTAATGGGCCCAGATCTCAAACACGCACTGGACTCGATTCGTTGGGCCACAGATTATTTCCTAAAAGCCACAAGCACCCCTGGGCTTGTGTTTGCAGTGGTTGGTGACCCATATAGTGATCATAATTGCTGGGAGAGACCTGAAGACATGGACACACCTAGAACTGCCTATGCTGTTAGCAAGGACTACCCTGGCTCGGAAGTCTCAGCTGAAATAGCAGCAGCACTTGCAGCCTCTTCCATTGTCTACAGAAAATATCATCTTGGTTATTCGAGAAGGCTTCTCCAAAGGGCTATAATGGTTTTTGACTTTGCAGATAAGTACAGAGGATCATACAATGACAGCATCGGACACTGGGTATGCCCATTCTATTGTGATTATAGTGGCTACCAGGACGAATTGGTCTGGGGAGCAGCATGGTTGTTCAAGGCTACTAAGCTCCCTTTTTACTGGAATTACATTAAGCAAAACATTCATAATGTGAAAAACTTTGGTGAATTTGGATGGGACTCAAAGGATGCTGGTATCAACGTGCTCGTATCAAAGCTTCTAATGAGTAGCTCTCCTAACTCATTTATCCTCAATGCTGACAAGTTTATCTGCTCTGTGCTACCTGAATCACCTTCAGTATCAGTTTCATACTCTCGAGGTGGGCTATTATTCAAGAATGGTGGGAGTAACTTGCAACATGCAACAACACTCTCATTTCTTTTTCTTGTTTATGCTCGCTATTTGAATAAAGTCAAAAAAGAGATTGACTGTGGCGGTAATGTTTTTGCTTCTCCAAGGCGACTTAAACAATTAGCAAAAGGCCAGGTGGATTACATACTAGGAACCAACCCATTGAATATGTCATACATGGTAGGATATGGATCAAAGTTTCCTCAAAGAATACATCATCGTGCATCATCACTACCATCTGTAGATCAGCACCCTGGCTACGTTGGTTGCGAAGGAGGATCCCCTTATTTTCAAAGTCAATACTCAAACCCTAACTTGCTTATAGGAGCTGTCGTAGGGGGGCCAGATATCACAGATTCGTATGAAGATTCTCGAACTGATTTTGTGCATTCAGAACCTACAACATATATCAATGCACCACTTGTGGGTGTTTTGGCTTACTTCAAATCATATCCATCTTAA 1497 0.4282 MNLMGLAQRLLVMIVVGTLLCVTERSRGNSQQHNYGEALSKSILFFEGQRSGKLPPTQRMTWRKDSALQDGFQLADTRFFDQVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKLMGPDLKHALDSIRWATDYFLKATSTPGLVFAVVGDPYSDHNCWERPEDMDTPRTAYAVSKDYPGSEVSAEIAAALAASSIVYRKYHLGYSRRLLQRAIMVFDFADKYRGSYNDSIGHWVCPFYCDYSGYQDELVWGAAWLFKATKLPFYWNYIKQNIHNVKNFGEFGWDSKDAGINVLVSKLLMSSSPNSFILNADKFICSVLPESPSVSVSYSRGGLLFKNGGSNLQHATTLSFLFLVYARYLNKVKKEIDCGGNVFASPRRLKQLAKGQVDYILGTNPLNMSYMVGYGSKFPQRIHHRASSLPSVDQHPGYVGCEGGSPYFQSQYSNPNLLIGAVVGGPDITDSYEDSRTDFVHSEPTTYINAPLVGVLAYFKSYPS* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0049 498 Pfam Glycosyl hydrolase family 9 35 490 IPR001701 GO:0004553|GO:0005975
Lja3g0049 498 SUPERFAMILY Six-hairpin glycosidases 32 496 IPR008928 GO:0005975
Lja3g0049 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 393 419 IPR018221 -
Lja3g0049 498 PANTHER ENDO-1,4-BETA-GLUCANASE 19 496 - -
Lja3g0049 498 Gene3D - 30 498 IPR012341 GO:0005975
Lja3g0049 498 PANTHER ENDOGLUCANASE 19 496 - -
Lja3g0049 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0049 Lja-Chr3 548143 554065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0049 30 496 Glycoside Hydrolase AT1G70710 61.311 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0049 K01179 - gmx:100775752 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0049 3 548143 554065 Lja3g0049 3 548143 554065 ECH