Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0021 ATGGCCGACAATCATTCAAACCCTACACCTCCTCCTCCTCCTGTTACTCCGCCGCCTGCTGATTCATCCACCGTACCTGCGGAATCGGAACCCGTGGTTGCCGAGCTGCTTCATCCTCCTCCTCTGCCACCAGACGATGCGGTAGTTCTTGAACGCGGAGACGAAGAAGATCACCAGCTCAAGATTCCTCAGAACTTGGGTTCATTCAAGCAAGAGAGCAACTTACCATGCGATCTCTCCGATTCAGAGACAAAGGCCGTTCAAGACCTCAAGCAGCTCCTCACAGTCACAGATGAACCTTCCATCTGGGGTGTTCCTCTGCTCAAGGACGACAGGACCGATGTCATTCTTCTCAAATTCCTCAGAGCCCGCGAGTTCAAAGTCAAAGATGCGCTTCTCATGATCAACAACACGCTCCGCTGGAGGAAGGATTTCAACATCGATGCTCTTTTGGAAGATGAGGACGACCACCATCTCGACAAGGTCGTCTTCATGCATGGTCATGACAGGGAGGGTCACCCCGTCTGCTACAATGTCTATGGAGAGTTTCAGAATAAGGAACTCTACAACAAGACCTTCTCAGATGAACAAAAGAGAACCAGGTTCCTCCGCTGGCGGGTTCAGTTCTTGGAGAGGAGTATCAGGAAACTCGACTTCACTCCTGGTGGTGTTAACACCATTGTTCAGGTCAATGACCTTAAAAATTCACCTGGCCCTGCTAAACGCGAGCTCCGCCTCGCCACCAAGCAGGCCTTGCAATTGCTTCAGGACAATTACCCTGAGTTTGTTGCCAAACAGGTTTTTATCAATGTCCCTTGGTGGTATCTAGCATTCTATACCATGATCAATCCCTTCTTGACTCAGAGGACAAAAAGCAAATTTGTCTTTGCAGGCCCATCCAAGTCTCCTGATACACTTTTCAAGTATATTTCTCCGGAGCAAGTGCCTATTCAGTATGGTGGCCTAAGTGTAGATTTTTGTGACTGCAATCCAGATTTCAGCATGTCTGATCCTGTCACGGAAATTCCATTAAAGCCCAACACGAAGCAAACTGTGGAAATTGCCATTTATGAGAAATGCATTATTGTCTGGGAGCTGCGTGTGGTGGGCTGGGAGGTTAGCTATAGTGCTGAATTCAAGCCTGATGCTAAAGATGGATATACAGTTATTATACAGAAGGCTACGAAGATGTCCCCTAGTGATGAACCTGTGGTTTCCAATCACTTCAAAGTTGCTGAACTGGGCAAGTTATTGCTCACTGTCGACAATCCCACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAACATCAAACCTTACTGTGATTGA 1329 0.4755 MADNHSNPTPPPPPVTPPPADSSTVPAESEPVVAELLHPPPLPPDDAVVLERGDEEDHQLKIPQNLGSFKQESNLPCDLSDSETKAVQDLKQLLTVTDEPSIWGVPLLKDDRTDVILLKFLRAREFKVKDALLMINNTLRWRKDFNIDALLEDEDDHHLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEQKRTRFLRWRVQFLERSIRKLDFTPGGVNTIVQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPSKSPDTLFKYISPEQVPIQYGGLSVDFCDCNPDFSMSDPVTEIPLKPNTKQTVEIAIYEKCIIVWELRVVGWEVSYSAEFKPDAKDGYTVIIQKATKMSPSDEPVVSNHFKVAELGKLLLTVDNPTLKKKRLLYRFNIKPYCD* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0021 442 CDD SEC14 159 322 IPR001251 -
Lja3g0021 442 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g0021 442 PANTHER PATELLIN-3 54 94 - -
Lja3g0021 442 SUPERFAMILY CRAL/TRIO domain 162 330 IPR036865 -
Lja3g0021 442 SMART CRAL_TRIO_N_2 113 138 IPR011074 -
Lja3g0021 442 ProSiteProfiles GOLD domain profile. 332 437 IPR009038 -
Lja3g0021 442 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 321 IPR001251 -
Lja3g0021 442 PANTHER PATELLIN-3 97 442 - -
Lja3g0021 442 PANTHER PATELLIN-1 97 442 IPR044834 GO:0008289
Lja3g0021 442 PRINTS Cellular retinaldehyde-binding protein signature 116 138 - -
Lja3g0021 442 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Lja3g0021 442 Pfam CRAL/TRIO domain 162 321 IPR001251 -
Lja3g0021 442 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g0021 442 Pfam CRAL/TRIO, N-terminal domain 82 137 IPR011074 -
Lja3g0021 442 SUPERFAMILY CRAL/TRIO N-terminal domain 75 153 IPR036273 -
Lja3g0021 442 Gene3D - 73 358 IPR036865 -
Lja3g0021 442 PANTHER PATELLIN-1 54 94 IPR044834 GO:0008289
Lja3g0021 442 SMART sec14_4 156 324 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0021 Lja-Chr3 292105 294689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0021 85 316 Acyl Lipid Metabolism Gene Families AT5G47730 25.926 3.35e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0021 - - gmx:100804006 635.95