Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0020 ATGGCTGAGGAAACCCAAAAACCAGCTGAAGAAGTCATCGCAGCTGCCCCCTTGGACACCACGTCCAAGGACGCACCACCTGCACAAGTAGAAGAAGTCACGGAGCCAGCTGCAGCAGCAGTTGAAGAGGTGGCGGAGGAAGCAGAGAAACCAGCAGCAGCAGCAGCTGAAGATGCTGCGGCCGAGGAGAAGAAGATATCTCAATCGGTGTCTTTCAAGGAGGAGAGCAACGTGGTCGCTGACCTCCCCGAACCTCAGAAGAAGGCACTCGATGACCTCAAACAACTTATTCAAGATGCCCTCAACAAGCACGAGCTCTCTGCTCCCCCACCCCCCAAGGCCCCGTCACCATCCACTGAGGCCAAGAAGGACGAAGTTGCAGCTGCAGCTACAGAAGAAAAAGTAGAAGAAGAAGAAGAGAAGAAAACAGAGGAAGAAAAGAAACCTGCTGAAGAAGAGAAGAAGGAAGAGGTAGTTGAAGAAGAAAAGAAACCTGCTGAAGAAGAGAAGAAGGCCGAAGCTGAGGGTGAGGCCACAACAAGCGGTGAAGAGAAGAACGTGGTCGAAGCAGTGACGGAGGTGGTGGTAGAGGCAGGTGAAAAGACGGTGGAAGCTATTAAGGAAACCATAGTATCTGTGGTTGCTGTAGGTGAAGAAGAAGAAGGAAAGGAAGCTCCTCCTGAAATTCCTTCAGAGCCAGAGGAAGTATCAATTTGGGGAATTCCCCTGCTTGCTGATGAGAGGAGCGATGTGGTCCTCCTCAAATTCCTGAGAGCCAGGGACTTCAAGGTTAAAGATGCCTTCACCATGATCAAAAACACGGTGCGTTGGCGCAAGGAATTCGGCATCGACGCCCTGGTCGATGAAGATCTGGGAAGTGAGTGGGACAAGGTGGTGTTCACTCAAGGACATGACAAGCTAGGCCACGCTGTTTGCTACAACGTCTTCGGTGAGTTCGAGGACAAGGAGTTGTATCAGAAAACATTCTCTGACGACGAGAAGCGCCAGAAGTTCATCAAGTGGAGGATTCAGGTGTTGGAGAAGAGTGTCAGAAAACTTGACTTCTCTCCTACTCCTACTGCTATCTCTACCATTGTTCAGGTCAATGATCTCAAAAACTCTCCTGGACTTGGCAAGTGGGAGCTCAGGCAAGCTACTAATCAGGCACTTCAACTGCTTCAAGATAACTACCCTGAGTTTGTAGCCAAACAGGTGTTTATCAACGTCCCTTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCTTTCCTGACACAGAGGACCAAGAGCAAATTCGTCTTTGCTGGCCCATCCAAATCTGCTGAAACCCTTTTCAAATATATAGCTCCAGAGCTAGTGCCAGTTCAATATGGAGGACTGAGCAGGGAGGGTGAACAGGAATTCACCACTGCTGACCCTGTCACTGAGGTTACAATTAAACCAGCAACAAAGCATGCTGTTGAGTTACCAGTTTCTGAGAAAGGACATCTGGCTTGGGAACTCCGAGTTGTGGGTTGGGATGTGAACTATGGAGCAGAATTTATGCCTGGTGCTGAAGATGGTTACACTGTGATAGTGCAGAAGAACAGGAAAATTGGTCCAGCTGATGAGACAGTGATCAGTAACAGCTTCAAAGTTGGCGAAGCAGGCAAGGTTGTGCTCACCATTGATAACCAAACATCCAAGAAGAAGAAGCTCCTCTACAGGTCCAAGACCACTCCCATCTCTGACTGA 1734 0.4925 MAEETQKPAEEVIAAAPLDTTSKDAPPAQVEEVTEPAAAAVEEVAEEAEKPAAAAAEDAAAEEKKISQSVSFKEESNVVADLPEPQKKALDDLKQLIQDALNKHELSAPPPPKAPSPSTEAKKDEVAAAATEEKVEEEEEKKTEEEKKPAEEEKKEEVVEEEKKPAEEEKKAEAEGEATTSGEEKNVVEAVTEVVVEAGEKTVEAIKETIVSVVAVGEEEEGKEAPPEIPSEPEEVSIWGIPLLADERSDVVLLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDALVDEDLGSEWDKVVFTQGHDKLGHAVCYNVFGEFEDKELYQKTFSDDEKRQKFIKWRIQVLEKSVRKLDFSPTPTAISTIVQVNDLKNSPGLGKWELRQATNQALQLLQDNYPEFVAKQVFINVPWWYLAFSRMISPFLTQRTKSKFVFAGPSKSAETLFKYIAPELVPVQYGGLSREGEQEFTTADPVTEVTIKPATKHAVELPVSEKGHLAWELRVVGWDVNYGAEFMPGAEDGYTVIVQKNRKIGPADETVISNSFKVGEAGKVVLTIDNQTSKKKKLLYRSKTTPISD* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0020 577 PRINTS Cellular retinaldehyde-binding protein signature 252 274 - -
Lja3g0020 577 PRINTS Cellular retinaldehyde-binding protein signature 417 436 - -
Lja3g0020 577 SUPERFAMILY CRAL/TRIO N-terminal domain 75 290 IPR036273 -
Lja3g0020 577 SMART sec14_4 292 462 IPR001251 -
Lja3g0020 577 MobiDBLite consensus disorder prediction 1 185 - -
Lja3g0020 577 Gene3D - 200 280 - -
Lja3g0020 577 MobiDBLite consensus disorder prediction 85 99 - -
Lja3g0020 577 PANTHER PATELLIN-LIKE PROTEIN 1 577 - -
Lja3g0020 577 SUPERFAMILY CRAL/TRIO domain 298 461 IPR036865 -
Lja3g0020 577 Gene3D - 294 477 IPR036865 -
Lja3g0020 577 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 474 573 IPR036598 -
Lja3g0020 577 Pfam CRAL/TRIO, N-terminal domain 233 273 IPR011074 -
Lja3g0020 577 SMART CRAL_TRIO_N_2 249 274 IPR011074 -
Lja3g0020 577 MobiDBLite consensus disorder prediction 125 182 - -
Lja3g0020 577 CDD SEC14 294 460 IPR001251 -
Lja3g0020 577 Gene3D GOLD domain 478 572 - -
Lja3g0020 577 Pfam CRAL/TRIO domain 297 459 IPR001251 -
Lja3g0020 577 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 288 465 IPR001251 -
Lja3g0020 577 ProSiteProfiles GOLD domain profile. 441 572 IPR009038 -
Lja3g0020 577 Coils Coil 121 161 - -
Lja3g0020 577 PANTHER PATELLIN-1 1 577 IPR044834 GO:0008289
Lja3g0020 577 MobiDBLite consensus disorder prediction 43 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0020 Lja-Chr3 283969 286772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0020 253 454 Acyl Lipid Metabolism Gene Families AT1G55840 28.302 7.59e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0020 - K19996 pvy:116125863 630.557