Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g0015 | ATGAACAAGCTGGTGGTGGAAGTACTTGATGCCAGCGACCTTATGCCAAAAGATGGAGAAGGGTCAGCAAGCCCCTTTGTGGAGGTAGACTTTGATGAGCAACAGCAGAGGACTCAAACCAAACACAAGGACCTCAATCCTTATTGGAATGAGAAGTTTGTCTTCAACATCAATAACCCGAGAGATCTTCCTCACCAGACAATTGAAGTAGTTGTATACAATTACAATGATCAAAAACCAGGTAACCACAAGAACTTCCTTGGAAGGGTGAGAATTTCAGGTGATTCTGTCCCTTTCTCTGAGTCTCAAGCTACTATCGAACGCTACCCACTTGACAAAAGGGGTCTATTTTCAAATATCAAAGGAGATATTGCTCTTAGAATTTATGCTGTTCATGATCCTTCTGCTTATACTGCTCCTTCTCCTCCTCCACAACTACAACCACAAGCCAGTGAAGAATTTGAGCCTCATCCTTATCCTTATGAGGAGGAGACTCCCTTGCAAGAAATAAACACTAACATAGTAGATGAGGAAAGCATGGTTGGTGATATTGAGAGGAAAAATAAGAAGCACAAGAACAAGAAGAAAGAAAAGGAAGTGAGAACTTTTCACTCCATTGGGACCGAGAAAGCTGCTCCAGCTCCTGCAGCAAGGCCTCCTCAAGCGGCACCAACAGTGGAAATGAGAGCTGATTTTGCAAAAGCAGGGCCACCCAATGTGATGTTAATGCAGATCCCGAAGCAAAACCCAGAGTATGGATTGGTGGAGACAAGTCCACCCCTTGCAGCTCGTTTGCGCTATAGAGGAGGGAACAAGATGTCAACCACGTATGATATGGTGGAACAGATGCATTACTTGTACGTGAATGTGGTGAAGGCAAGAGATCTTCCAGTGATGGATATCTCAGGAAGCCTTGACCCTTATGTGGAAGTGAAGCTTGGTAACTACAAAGGGGTTACAAAGCACTTGGATAAGAATCAGAATCCAGTTTGGAAGCAAATCTTTGCCTTCTCAAAGGAGAGATTGCAATCAAATTTGCTTGAAGTGACTGTGAAGGATAAGGACATTGGTAAAGATGATTTTGTGGGTAGAATTATGTTTGATCTCACTGAGGTTCCTCTTCGGGTACCCCCAGATAGCCCGCTGGCTCCTCAATGGTACAGATTGGAGGACAAGAAAGGGCAAAAGATACATCATGGAGAAATCATGCTTGCAGTTTGGATGGGAACACAAGCTGATGAGTCATTTCCAGAGGCCTGGCACTCTGATGCTCATAACGTTAGTCACTCAAACCTTGCAAATACCCGTTCAAAGGTATATTTCACTCCCAAGCTTTACTATCTTAGAGTTCAAGTGATTGAAGCTCAAGATCTTGTCCCTTCCAACAAAGGAAGAGCTCCGGATGCTTGTGTTAGAGTAACACTAGGAAATCAGATGAGATACACAAGGACTTCTCAAATGAAAGTCATTAACCCAGTTTGGAACGATGAGCTCATGTTTGTGGCAGCTGAACCTTTTGAGGATTTTATAGTTGTGACAGTTGAGGACAGAGTAGGTCCTGGTCCTAACAATGTTGAGATCTTGGGAAGGGAGATTATATCAGTCAGAAGTGTTCCTCCCAGGCATGAGAGCAAGCCCCCTGATTCTCGTTGGTACAATTTGCACAGGCCTAGTGCGGTTGGTGAGGAAGAAACAGAGAAAAAGAAGGAGAAATTCTCAAGCAAGATTCACCTCAGAATCTGTCTCGAGGCAGGGTATCACGTGCTTGATGAGTCCACACATTTTAGCAGTGATCTCCAGCCATCCTCCAAACATTTGAGGAAGAAAAACATTGGAATTCTCGAACTTGGGATACTGAGTGCCCGGAATTTGCTTCCTATGAAGGGCAAGGAAGGTAGGACTACTGATGCATACTGTGTGGCCAAGTATGGCAACAAATGGGTTCGAACCAGAACTCTGCTTGACACTCTATCCCCTAGATGGAATGAGCAGTATACATGGGAAGTGCATGATCCATGTACTGTGATCACAATCGGGGTTTTTGACAATCACCACATCAATGGGAACGGTGACCATAAAGATCAGAGGATTGGAAAGGTGAGAATCCGGTTATCAACTCTTGAAACTGATAGAGTGTATACTCATTATTATCCTCTACTGGTTCTCCAACCCAATGGCCTGAAGAAGAATGGAGAGCTTCATTTGGCAGTGAAATTCACCTGCACAGCTTGGGTTAACATGGTAGCACAGTATGGAAGGCCTTTGCTTCCCAAAATGCATTATGCCCAACCCATACCTGTTAGGCACATTGATTGGCTCCGCCACCAGGCCATGCAGATTGTGGCAGCACGGTTGTCAAGAGCCGAGCCACCGCTTAGACAAGAAGCAGTTGAGTACATGCTTGATGTGGATTACCATATGTGGAGTCTGAGGAGAAGCAAAGCCAATTTTCACCGGATAATGTCACTCCTCTCAGGTGTTACAGCTGTGTGTAAATGGTTTGACAACATCTGCACTTGGAGAAACCCAGTGACAACCTGCCTTGTTCATGTCTTATTCTTGATCTTGGTTTGCTACCCAGAACTGATATTGCCCACTATTTTTCTTTACCTGTTTGTAATTGGGATTTGGAATTACCGGTTCAGGCCAAGGCATCCGCCCCACATGGATGCTAGGCTTTCACAAGCAGAAACCGCCCACCCAGATGAATTGGACGAGGAATTTGACACTTTTCCAACTACAAGACCTGCAGATATTGTGAGAATGAGGTACGACAGAATGCGGAGTGTGGCAGGTAGAGTTCAGACTGTGGTTGGAGATTTGGCAACTCAGGGAGAAAGAGCTCAAGCAATATTAGGTTGGAGAGACTCAAGGGCTACATCTATCTTCATCATCTTCTCACTGATCTGGGCTGTGTTCATTTACATTACTCCCTTTCAGGTAGTAGCAATTCTAGTAGGCCTCTACATGCTGCGTCATCCTCGGTTTAGGAGCAAGATGCCATCAGTGCCGGTTAATTTCTTCAAGAGATTGCCTTCTAAATCAGACATGCATGCCTGGCTTGGACCTCTCCCTTCCCCTGCCTAA | 3087 | 0.449 | MNKLVVEVLDASDLMPKDGEGSASPFVEVDFDEQQQRTQTKHKDLNPYWNEKFVFNINNPRDLPHQTIEVVVYNYNDQKPGNHKNFLGRVRISGDSVPFSESQATIERYPLDKRGLFSNIKGDIALRIYAVHDPSAYTAPSPPPQLQPQASEEFEPHPYPYEEETPLQEINTNIVDEESMVGDIERKNKKHKNKKKEKEVRTFHSIGTEKAAPAPAARPPQAAPTVEMRADFAKAGPPNVMLMQIPKQNPEYGLVETSPPLAARLRYRGGNKMSTTYDMVEQMHYLYVNVVKARDLPVMDISGSLDPYVEVKLGNYKGVTKHLDKNQNPVWKQIFAFSKERLQSNLLEVTVKDKDIGKDDFVGRIMFDLTEVPLRVPPDSPLAPQWYRLEDKKGQKIHHGEIMLAVWMGTQADESFPEAWHSDAHNVSHSNLANTRSKVYFTPKLYYLRVQVIEAQDLVPSNKGRAPDACVRVTLGNQMRYTRTSQMKVINPVWNDELMFVAAEPFEDFIVVTVEDRVGPGPNNVEILGREIISVRSVPPRHESKPPDSRWYNLHRPSAVGEEETEKKKEKFSSKIHLRICLEAGYHVLDESTHFSSDLQPSSKHLRKKNIGILELGILSARNLLPMKGKEGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWNEQYTWEVHDPCTVITIGVFDNHHINGNGDHKDQRIGKVRIRLSTLETDRVYTHYYPLLVLQPNGLKKNGELHLAVKFTCTAWVNMVAQYGRPLLPKMHYAQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRQEAVEYMLDVDYHMWSLRRSKANFHRIMSLLSGVTAVCKWFDNICTWRNPVTTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRHPPHMDARLSQAETAHPDELDEEFDTFPTTRPADIVRMRYDRMRSVAGRVQTVVGDLATQGERAQAILGWRDSRATSIFIIFSLIWAVFIYITPFQVVAILVGLYMLRHPRFRSKMPSVPVNFFKRLPSKSDMHAWLGPLPSPA* | 1029 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g0015 | 1028 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 132 | IPR035892 | - | |
| Lja3g0015 | 1028 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 446 | 603 | IPR035892 | - | |
| Lja3g0015 | 1028 | Gene3D | C2 domain | 1 | 156 | IPR035892 | - | |
| Lja3g0015 | 1028 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 612 | 745 | IPR035892 | - | |
| Lja3g0015 | 1028 | ProSiteProfiles | C2 domain profile. | 426 | 552 | IPR000008 | - | |
| Lja3g0015 | 1028 | Gene3D | C2 domain | 610 | 743 | IPR035892 | - | |
| Lja3g0015 | 1028 | MobiDBLite | consensus disorder prediction | 136 | 155 | - | - | |
| Lja3g0015 | 1028 | Pfam | Plant phosphoribosyltransferase C-terminal | 864 | 1017 | IPR013583 | - | |
| Lja3g0015 | 1028 | ProSiteProfiles | C2 domain profile. | 1 | 109 | IPR000008 | - | |
| Lja3g0015 | 1028 | PANTHER | BNAA09G30540D PROTEIN | 1 | 1017 | - | - | |
| Lja3g0015 | 1028 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 285 | 424 | IPR035892 | - | |
| Lja3g0015 | 1028 | CDD | C2A_MCTP_PRT_plant | 3 | 129 | - | - | |
| Lja3g0015 | 1028 | CDD | C2C_MCTP_PRT_plant | 447 | 601 | - | - | |
| Lja3g0015 | 1028 | Pfam | C2 domain | 612 | 719 | IPR000008 | - | |
| Lja3g0015 | 1028 | Pfam | C2 domain | 285 | 387 | IPR000008 | - | |
| Lja3g0015 | 1028 | Pfam | C2 domain | 3 | 102 | IPR000008 | - | |
| Lja3g0015 | 1028 | Pfam | C2 domain | 447 | 554 | IPR000008 | - | |
| Lja3g0015 | 1028 | ProSiteProfiles | C2 domain profile. | 595 | 717 | IPR000008 | - | |
| Lja3g0015 | 1028 | CDD | C2D_MCTP_PRT_plant | 613 | 736 | - | - | |
| Lja3g0015 | 1028 | CDD | C2B_MCTP_PRT_plant | 285 | 410 | - | - | |
| Lja3g0015 | 1028 | PANTHER | PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 | 1 | 1017 | - | - | |
| Lja3g0015 | 1028 | ProSiteProfiles | C2 domain profile. | 267 | 387 | IPR000008 | - | |
| Lja3g0015 | 1028 | Coils | Coil | 181 | 201 | - | - | |
| Lja3g0015 | 1028 | SMART | C2_3c | 613 | 716 | IPR000008 | - | |
| Lja3g0015 | 1028 | SMART | C2_3c | 447 | 547 | IPR000008 | - | |
| Lja3g0015 | 1028 | SMART | C2_3c | 3 | 111 | IPR000008 | - | |
| Lja3g0015 | 1028 | SMART | C2_3c | 285 | 381 | IPR000008 | - | |
| Lja3g0015 | 1028 | Gene3D | C2 domain | 270 | 408 | IPR035892 | - | |
| Lja3g0015 | 1028 | Gene3D | C2 domain | 429 | 582 | IPR035892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g0015 | Lja-Chr3 | 237818 | 240904 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja3g0015 | 1 | 1017 | Lipid Metabolism Gene Families | AT1G22610 | 73.365 | 0.0 | 1524 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g0015 | - | - | gmx:100778133 | 1746.87 |