Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0014 ATGGAGGACATTGAGGATATGCTGATCGGAACCACAACTGGTCACCCGGCAGGCTTTCGTTTGCCAGTAGCGGCAGTTGGTGTTGGCGTTGGAACGAAGAGGAATCAGCGTTGTTCACCTTGTTCTTCTGCAATCCCTGGCACTCAGACTATCTACATGAAGACCTTCGGCTGCTCTCATAACCAGAGTGACAGTGAATATATGGCTGGTCAGCTTTCGGCTTTCGGCTATTCATTGAGTGATAACCCCGACGAAGCCGATCTATGGCTCATCAACACTTGCACAGTCAAATCCCCAAGTCAATCTGCCATGGACACCATCATAGCAAAAGGTAAATCTTCAAATAAACCACTAGTTGTTTCTGGCTGTGTACCTCAAGGAAGTCGAGATTTGAAAGAGCTCGACGGGATCAGCATAGTTGGAGTCCAGCAAATTCATCGTGTTGTTGAAGTTGTAGAGGAGACTTTAAAAGGTCATGAAGTGCGTCTTTTGACCCGTAAGACATTGCCAGCACTTGACCTTCCAAAGGTGAGAAAGAACAAGTTTGTTGAGATTCTTCCAATTAATGTTGGTTGTTTAGGTGCGTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGGAGTTACACTATAGATAGCCTTGTTGGGCGTGTAAAATCTGTCATATCTGATGGAGTTAAAGAGATTTGGCTAAGCAGTGAAGACACTGGAGCTTATGGTCGTGACATTGGTGCCAATCTTCCAAATTTATTGAATGCATTAGTAGCAGAACTACCACCTAATGCGAGCACTATGCTTCGTATCGGAATGACCAATCCTCCTTTTATCCTTGAGCACTTGAAAGAGATAGCAGAGATTTTGCGGCATCCATGTGTGTATTCTTTTTTGCATGTACCAGTTCAGTCTGGAAGTGATACTATTTTGAGTGCAATGAATCGGGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACCTTAACTGAGCTTGTGCCAGGGATGCAGATTGCCACCGATATAATATGTGGATTTCCTGGTGAAACTGATGAGGATTTTTCACAAACTGTCAACCTCATCAAAGAGTACAAGTTCTCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTGAAGAGAAGAAGCCGTGAACTGACCAATGTTTTTGAAGCCTTCACACCATACTCTGGGATGGAAGGCAAAGTGGAAAGAATCTGGATTACTGATGTTGCATCTGATGGAGTTCACTTGGTTGGTCATACGAAGGGATATATACAAGTTCTTGTAATTGCTCCAGACTATATGCTGGGAACTTCAGCTATGGTTAAAATAACATCTGTTGGAAGGTGGTCAGTTTTTGGGGAAGTAATTGAGATGGTCAACCATGTAAGTGATGATAAAGTCGTAAACAAGCAGGATCCCAATCAGGACATGCAAGAGCCAGAATCTTGTGCTTGTGGAAATGATATTGACAGCTGCTGTGGTCAGAGTAATCTCGATAAGAATGATCAGTCAAGAGGCCCTGCAGAGCCACAGAGTCAAAACAGTAGAAATTTCATCGGATGGATACTGAGGAAGCGGAAGCATCTGCACAAAGGGGTAGAGAGTGAACTTGCGTCCGGATCTGTTCAAAATCAAGAAGGGAGCATGAAAAAGTTGGACTTTGTTGACAAGGCTCTTTTGAGCGGAATATCTATCAGCATCTTTATGATTATTGCTATAGTAGCTGCTCTTACGTTTAGGGTTATTTGGTCCCAGTAA 1806 0.4341 MEDIEDMLIGTTTGHPAGFRLPVAAVGVGVGTKRNQRCSPCSSAIPGTQTIYMKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDEADLWLINTCTVKSPSQSAMDTIIAKGKSSNKPLVVSGCVPQGSRDLKELDGISIVGVQQIHRVVEVVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGANLPNLLNALVAELPPNASTMLRIGMTNPPFILEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIICGFPGETDEDFSQTVNLIKEYKFSQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFEAFTPYSGMEGKVERIWITDVASDGVHLVGHTKGYIQVLVIAPDYMLGTSAMVKITSVGRWSVFGEVIEMVNHVSDDKVVNKQDPNQDMQEPESCACGNDIDSCCGQSNLDKNDQSRGPAEPQSQNSRNFIGWILRKRKHLHKGVESELASGSVQNQEGSMKKLDFVDKALLSGISISIFMIIAIVAALTFRVIWSQ* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0014 601 ProSiteProfiles TRAM domain profile. 411 473 IPR002792 -
Lja3g0014 601 Gene3D tm_1862 like domain 180 410 IPR023404 -
Lja3g0014 601 SFLD Radical SAM 130 396 IPR007197 GO:0003824|GO:0051536
Lja3g0014 601 CDD Radical_SAM 186 390 - -
Lja3g0014 601 SFLD B12-binding domain containing 130 396 - -
Lja3g0014 601 SMART MiaB 182 406 IPR006638 GO:0003824|GO:0051536
Lja3g0014 601 Gene3D - 50 169 IPR038135 -
Lja3g0014 601 PANTHER RADICAL SAM PROTEINS 1 542 - -
Lja3g0014 601 ProSiteProfiles Radical SAM core domain profile. 178 411 IPR007197 GO:0003824|GO:0051536
Lja3g0014 601 Pfam Uncharacterized protein family UPF0004 51 129 IPR013848 GO:0035596|GO:0051539
Lja3g0014 601 Pfam Radical SAM superfamily 189 361 IPR007197 GO:0003824|GO:0051536
Lja3g0014 601 ProSitePatterns Methylthiotransferase radical SAM domain signature. 186 206 IPR020612 GO:0051539
Lja3g0014 601 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 50 467 IPR005839 GO:0006400|GO:0016740|GO:0051539
Lja3g0014 601 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 49 157 IPR013848 GO:0035596|GO:0051539
Lja3g0014 601 SUPERFAMILY Radical SAM enzymes 172 406 - -
Lja3g0014 601 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 51 472 IPR006466 GO:0035598|GO:0035600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0014 Lja-Chr3 232173 241122 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0014 K15865 - gmx:100798865 999.964