Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0011 ATGAGGGAGAGTAACGGGAACGAGAACGAAAAGGATCTGGGAGTGCACTTCTTGGAGGTGTGTCGTCGGAAGGAGAAGGAGACGGAGATGGAAGAAGATGATCAAATGGAGGAGTCACCCAGCGAACTGAACACCATTAACAGCTCTGGTGGTTTTGTGGTGGTTTCCACCGACAAACTGTCAGTGAAGTACACGAGCATCAACCTTCACGGCCACGATGTTGGTGTCATTCAGGCTAACAAGCCTGCTCCAACCAAGCGCCTTGTTTACTATTTCGAGATTCATGTCAAGGATGCCGGAGTTAAGGGTCAAATTGCCATTGGCTTTACCTCTGAGACCTTCAAGATGCGAAGACAACCTGGGTGGGAGGCCAATAGCTGTGGATATCATGGCGATGATGGTTTGCTTTATCGTGGACATGGCAAGGGTGAACCCTTTGGCCCAACCTATACATCTGGTGATATTGTTGGTGCTGGAATTAACTATGCCTCACACGAATTCCTTTTCACTAAAAATGGCCAAGTCGTCGGCACAGTTTACAAAGACATCAAGGGTCCCCTTTTTCCAACTATTGCTGTTCATAGCCAAAATGAAGAGGTGCATGTCAACTTTGGGCAGAAACCGTTTTCTTTTGACCTAAAGGAATTTGAAGCACAAGAAAGAATGAAGCAGCAAATGAAAATTGAGGAAATTTCTGTGCCACCAACTATCAGTTACAGAATTGTCCGTTCCTACCTGCTACACTATGGCTATGAAGATACATTGAATTCATTTGATGCGGCTAGTAGAAGTACTGTTCCTCCTATACATATAGCTCAAGAAGAAAATGTAATACATGAGCAGGAAATATCATATACATTAAATCACAGAAGGACTTTACGGCAGCTAATCAGGGATGGGGAGATTGATGTTGCATTTGATAAATTGCGTGAATGGTATCCCCAGATTGTTAAGGGCAATACATCAGCTACATGTTTCCTGCTTCATTGTCAAAAATTTATTGAATTAGTTCGGGTTGGAGCCCTGGAAGAGGCTGTCAAATATGGAAGAAAAGAATTGTCAAATTTTTTTGGGTTGCCTTTGTTTGAGGATTTAGTTCAGGACTGTGTTGCTTTGCTGGCATATGAACGACCACTGGAATCCTCCGTAGGATATCTTCTAAAAGACTCACAGCGTGAAATTGTAGCCGACACAGTAAATGCCATGATATTGTCTACAAATATGAAAGGATCAACAGTTTGCTTGCACTCCAATCTTGAGAGGTTACTTAGACAGCTCACTGCTTGTTGCTTAGAGAGACGATCATTGAGTGGAGAGCAGGGAGAAGCTTTCGAACTTCAAAGAGTGCTCAATAGTTGTAGAAGAGGCTAG 1371 0.4325 MRESNGNENEKDLGVHFLEVCRRKEKETEMEEDDQMEESPSELNTINSSGGFVVVSTDKLSVKYTSINLHGHDVGVIQANKPAPTKRLVYYFEIHVKDAGVKGQIAIGFTSETFKMRRQPGWEANSCGYHGDDGLLYRGHGKGEPFGPTYTSGDIVGAGINYASHEFLFTKNGQVVGTVYKDIKGPLFPTIAVHSQNEEVHVNFGQKPFSFDLKEFEAQERMKQQMKIEEISVPPTISYRIVRSYLLHYGYEDTLNSFDAASRSTVPPIHIAQEENVIHEQEISYTLNHRRTLRQLIRDGEIDVAFDKLREWYPQIVKGNTSATCFLLHCQKFIELVRVGALEEAVKYGRKELSNFFGLPLFEDLVQDCVALLAYERPLESSVGYLLKDSQREIVADTVNAMILSTNMKGSTVCLHSNLERLLRQLTACCLERRSLSGEQGEAFELQRVLNSCRRG* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0011 456 Pfam SPRY domain 90 206 IPR003877 GO:0005515
Lja3g0011 456 MobiDBLite consensus disorder prediction 24 45 - -
Lja3g0011 456 PANTHER RAN BINDING PROTEIN 9-RELATED 25 453 - -
Lja3g0011 456 ProSiteProfiles LIS1 homology (LisH) motif profile. 234 266 IPR006594 GO:0005515
Lja3g0011 456 PANTHER RAN-BINDING PROTEIN M HOMOLOG 25 453 - -
Lja3g0011 456 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 286 344 IPR006595 -
Lja3g0011 456 Pfam CTLH/CRA C-terminal to LisH motif domain 288 429 IPR024964 -
Lja3g0011 456 SMART ctlh 286 344 IPR006595 -
Lja3g0011 456 CDD SPRY_RanBP_like 75 205 IPR044736 -
Lja3g0011 456 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 211 IPR013320 -
Lja3g0011 456 ProSiteProfiles B30.2/SPRY domain profile. 21 209 IPR001870 -
Lja3g0011 456 Gene3D - 19 225 IPR043136 -
Lja3g0011 456 SMART SPRY_3 87 208 IPR003877 GO:0005515
Lja3g0011 456 SMART toby_final6 340 439 IPR013144 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0011 K23334 - gmx:100805319 773.852