Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3398 ATGATGATGGCGGTTTTTCAAGATGAAGTAGCGAAATTGATCAGCTCTGATCTCACCGACCTTGTTGCAGCTGCTTATAAACTTGCTAAACATGTCATGATCCTTGGTGTCTCACCTTTTGGAGTTTCACTCATGGCTTCCATTGCTGCTATTTATTTGTTGATTTTGAATCACACTTACTTGAAATGGATGAGGGAGATTCGTACATCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATGTATTTTCGGCATTTTCAGGGCAGAGTTTGGGAAATGGATTGCTCTCATTGCTGTAGTATTGCGGCTTTTCTTTCCAAAGAATTTCCCTGATTGGTTGGAATTGCCTTCGGCTTTGATCCTTCTAATTGTTGTAGCTCCTGATCAATTTGCAAACACCTATAGAAGCAATGCCGTTGGGGTGGCAATATGCCTTGTCATTGTATGGTATGTTATGAAAAAATACATTCAAGCTTGGAGTGAGTTACAGGCATTCTACAATCGTAAAGAGACCTTCAACAAATCAATTGTAGTTGGTATAACCCTTATGATCGCCTATCCCATCTCAACGCTGGTGCAACACCTTGTATGGGCACTGATATGGTAA 612 0.4052 MMMAVFQDEVAKLISSDLTDLVAAAYKLAKHVMILGVSPFGVSLMASIAAIYLLILNHTYLKWMREIRTSLLIPYIFFSLPSCIFGIFRAEFGKWIALIAVVLRLFFPKNFPDWLELPSALILLIVVAPDQFANTYRSNAVGVAICLVIVWYVMKKYIQAWSELQAFYNRKETFNKSIVVGITLMIAYPISTLVQHLVWALIW* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3398 203 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 6 196 - -
Lja2g3398 203 Pfam Cold acclimation protein WCOR413 8 180 IPR008892 GO:0016021
Lja2g3398 203 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 6 196 IPR008892 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3398 Lja-Chr2 78095208 78097338 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3398 - - lja:Lj0g3v0067959.1 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3398 2 78095208 78097338 Lja2g3398 2 78095208 78097338 ECH