Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3259 ATGGCTGTGCTGCTGTTGCTTCTTCTTCACCTGCTTGCAATCTCTGTATCTGCTTCTCAAGATGCTTTTATCGGTGTCAACATTGGTACAGATGTCACTAACATGCCATGTCCAACTGAGGTTGTGGCCCTTCTTAAGGTCCAAAGCATCCAACATGTCAGACTCTATGACGCTGACCGAAACATGCTTCTCGCACTTGCCAAGACAGGAATCAGTGTAATTGTTTCTGTTCCCAATGATGAAATCCTCGGCATTGGCCAGTCCAACACCACGGCCGCCAATTGGGTTGCTCGTAACGTTGTAGCTCATGTCCCAGCCACTAACATCACTGCCATAGCGGTCGGATCTGAAGTCTTAACAACACTGCCAAATGCAGCCCCTGTCCTTGTCTCCGCTCTGAAATTCATCCAATCCGCTCTTGTTGCAGCTAATCTGGACGACCAAATCAAGGTCTCCACCCCACACTCTTCTTCTGTCATCCTCGACTCCTTCCCGCCTTCTCAGGCGTTTTTCAACCGCACTTGGAACCCCGTCATGGTTCCCTTGCTTCAATTTCTGCAGTCAACAGGTTCATATCTTATGCTCAATGTGTACCCTTATTATGATTACAGGCTATCAAATGATGTGATTCCTCTGGATTACGCTCTGTTCCGTCCCCTGCCTTCGAATAAGGAAGCTGTTGATACCAACACTCTCCTGCATTATACTAATGTCTTTGATGCAGTTGTTGATGCTGCTTATTTTGCAATGTCATATTTAAATTTCACCAATATCCCTATTCTAGTCACTGAGTCAGGATGGCCCTCCAAAGGTGACTCGTCCGAGCCAGACACAACTCCTGATAATGCGAACACTTACAATAGTAACTTGATCAGGCATGTCCTTAACAACACGGGGACTCCAAAGAAACCGGGAGTTTCTGTTAGCACGTATATTTATGAGCTTTATAACGAAGACTTAAGATCTGGTCCGGTCTCTGAGAACAACTGGGGGTTATTTTATGCTAATGGAGCACCAGTATATACCTTGCACTTGAGTGGTGCTGGTACTATATTTGCAAACGACACGACGAACCAAACCTTTTGCGTTGCCAAGAATAATGCCGATACTAAGATGCTTCAGGCTGCGCTTGATTGGGCTTGTGGACCTGGGAAGGTGGATTGCTCGCCTTTGCTGCAGGGTCAACCGTGTTATGAACCGGATAATGTTATTTCACATGCTACGTATGCTTTCAATGCGTATTATCAGCTGATGGATAAATCTTCTGGTACTTGTGATTTCAAAGGGGTTGCCTCTGTCACCACCACAAACCCAAGTCATGGTTCCTGTACATTTTCAGGAAGTGGTGGTAAAAATGTTACCAGCATTAATGGCACAGAAGCAGAACTGGCCCCCTCTACCAATTCTACAAATTCAGGCTCTTTATCACAATGCTACAATGGTGGATCTTTCACAAGCTCTCTCATTCTTGCTTTAATTTTGAGTGCATTTGTTATGTAA 1500 0.452 MAVLLLLLLHLLAISVSASQDAFIGVNIGTDVTNMPCPTEVVALLKVQSIQHVRLYDADRNMLLALAKTGISVIVSVPNDEILGIGQSNTTAANWVARNVVAHVPATNITAIAVGSEVLTTLPNAAPVLVSALKFIQSALVAANLDDQIKVSTPHSSSVILDSFPPSQAFFNRTWNPVMVPLLQFLQSTGSYLMLNVYPYYDYRLSNDVIPLDYALFRPLPSNKEAVDTNTLLHYTNVFDAVVDAAYFAMSYLNFTNIPILVTESGWPSKGDSSEPDTTPDNANTYNSNLIRHVLNNTGTPKKPGVSVSTYIYELYNEDLRSGPVSENNWGLFYANGAPVYTLHLSGAGTIFANDTTNQTFCVAKNNADTKMLQAALDWACGPGKVDCSPLLQGQPCYEPDNVISHATYAFNAYYQLMDKSSGTCDFKGVASVTTTNPSHGSCTFSGSGGKNVTSINGTEAELAPSTNSTNSGSLSQCYNGGSFTSSLILALILSAFVM* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3259 499 Gene3D - 354 461 - -
Lja2g3259 499 Pfam Glycosyl hydrolases family 17 24 344 IPR000490 GO:0004553|GO:0005975
Lja2g3259 499 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Lja2g3259 499 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 5 490 - -
Lja2g3259 499 SUPERFAMILY (Trans)glycosidases 24 344 IPR017853 -
Lja2g3259 499 Gene3D Glycosidases 23 350 - -
Lja2g3259 499 SMART X8_cls 360 445 IPR012946 -
Lja2g3259 499 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 5 490 IPR044965 GO:0004553|GO:0005975
Lja2g3259 499 Pfam X8 domain 361 431 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3259 Lja-Chr2 72065164 72070511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3259 20 439 Glycoside Hydrolase AT2G01630 78.571 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3259 K19891 - gmx:100810169 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3259 2 72065164 72070511 Lja2g3259 2 72065164 72070511 ECH