Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2911 ATGGAGGAGCAAGGAAACACCAACAACAACAGCATCAAGCAGAGCAACGCCATGAATGGCCATGTCGACACCTCCAAATCTGACAGAGCAGTGTGGCTCATGAAATGTCCACCCCTCGTTTCTCGCTCCCTCTATGCCCCTCCCTCCGACCCTTCCCGCCCCGTCGCTAAGGTCGTCGTCTCCATCGACCCCCTCAACTCCAACGACGACGATTCTTCTCCCCAGTTCACGATGGAGTTGGCTGGAACTGAATCTGGAAATATACCCAAATGTTATGCCATGGATATGTCTAAAGACTTCATTCCCATGTCTGTGTTTTCAGACACGCAGCAAGGAAAGATCTCTGTGGAGGGAAAAATACTGAACAAGTTTGACATGAGGCCCCATAATCAAAGTCTTGAGCTATATGGGAAACTCTGCCGTGAAAGGACAAACAAATATATGGTCAAAAATAGACAGATACAGGTTATTGATAATGACACTGGGGCTCATATGAGGCCAATGCCAGGGATGATCAGTTTTTCGGTTTCTGGACCTACTGATAAGAAGAAAACTCAAGCCAAAACAACAGAGATGAAGAGAACAAGAAGAGACCGTGGCGAAATGGAAGAGATTGTGTTCAAGCTATTTGAAAGGCAGCCCAATTGGAGTTTAAGAAACCTCATACAAGAAACCGACCAACCTGAACAATTTCTGAAAGATATACTGAAAGACCTATGTGTCTACAATAACAAAGGAACTAATCAAGGCACCTATGAACTGAAGCCTGAATACAGAAAATCTGGCGATTAA 792 0.4495 MEEQGNTNNNSIKQSNAMNGHVDTSKSDRAVWLMKCPPLVSRSLYAPPSDPSRPVAKVVVSIDPLNSNDDDSSPQFTMELAGTESGNIPKCYAMDMSKDFIPMSVFSDTQQGKISVEGKILNKFDMRPHNQSLELYGKLCRERTNKYMVKNRQIQVIDNDTGAHMRPMPGMISFSVSGPTDKKKTQAKTTEMKRTRRDRGEMEEIVFKLFERQPNWSLRNLIQETDQPEQFLKDILKDLCVYNNKGTNQGTYELKPEYRKSGD* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2911 263 MobiDBLite consensus disorder prediction 1 24 - -
Lja2g2911 263 SUPERFAMILY Rap30/74 interaction domains 19 129 IPR011039 GO:0006367
Lja2g2911 263 Pfam TFIIF, beta subunit N-terminus 29 123 IPR040504 -
Lja2g2911 263 Gene3D - 194 261 IPR036388 -
Lja2g2911 263 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 7 261 IPR003196 GO:0005674|GO:0006366|GO:0006367
Lja2g2911 263 PANTHER TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT 7 261 - -
Lja2g2911 263 CDD TFIIF_beta 20 128 - -
Lja2g2911 263 MobiDBLite consensus disorder prediction 172 197 - -
Lja2g2911 263 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g2911 263 SUPERFAMILY "Winged helix" DNA-binding domain 194 260 IPR036390 -
Lja2g2911 263 Pfam TFIIF, beta subunit HTH domain 196 259 IPR040450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2911 Lja-Chr2 48907679 48912757 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2911 K03139 - gmx:100790941 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2911 2 48907679 48912757 Lja2g2911 2 48907679 48912757 ECH