Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2819 ATGAAAACTGGAACTCTGCAACTGCAACTTCAACTTCACCTCTCCATTGCAACACTCGCCATGTTCCTTCTCAAGACATGGAGGCAAACGGCTTTTGGTGTTTATGGTTACCTCAATTTCACCAAACCTGGTTTTCTTGAACATTCTAAGAAATTCAAACCAGAGGAAATGGAAACACAAATACCCGGGAGGAATTGCATTGTTACAGGAGCTAACTCAGGAATTGGCTATGCTACAGCTGAGGGTCTTGCACAGCGTGGTGCTACTGTCTATCTTGTTTGCCGTAATAAAGAGAGAGGGGAGGCTGCTCTTTCTGAAATTCAAACTAAAACCGGCAATCGAAACGTACATTTGGAGATTTGTGACCTATCATCTGTCACGGAGATAAAGTCATTCGCTTCCAGGTTTTCTGAGAAGAATTTGCCATTACATGTGTTGGTGAACAATGCTGGCTTGATTGAGCAAAATCGAGTTACCACAACAGAAGGGTTTGAGTTGAACTTTGCTGTAAATGTTCTAGGAACTTACACTATGACAGAACTGATGGTACCATTACTGGAGAAAGCCTCACCTGATGCACGTGTCATTACCGTTTCTTCTGGTGGAATGTATACTTCTCCCTTGACCAAAGATCTTCAGTATTCCGAGAGCAACTATAATGGGGTTGAACAGTATGCTCGAAACAAGCGTGTTCAGGTTGCACTGACAGAAAAGTGGGCTGAGACATACGAGAACAAAGGGGTAGGATTTTACTCAATGCATCCAGGTTGGGCTGAAACTCCTGGGGTGGCTAAGAGTTTGCCAAGCTTCTCTAAATCGCTTTCAGGGAAGCTTAGAACAAGCGAGGAAGGTGCAGATACAGTTATCTGGTTGGCATTACAACCAAAAGAGAAACTGGTATCAGGTGCATTCTATTTTGATAGAGCAGAAGCTCCGAAGCACCTTGCATTTGCTGCTACCAGTGGTTCTCATGCTTTGATCAACTCTGTAGTTGATAGTCTTCATTCCATGGTTTCTCGTTTTGTCTAA 1029 0.4334 MKTGTLQLQLQLHLSIATLAMFLLKTWRQTAFGVYGYLNFTKPGFLEHSKKFKPEEMETQIPGRNCIVTGANSGIGYATAEGLAQRGATVYLVCRNKERGEAALSEIQTKTGNRNVHLEICDLSSVTEIKSFASRFSEKNLPLHVLVNNAGLIEQNRVTTTEGFELNFAVNVLGTYTMTELMVPLLEKASPDARVITVSSGGMYTSPLTKDLQYSESNYNGVEQYARNKRVQVALTEKWAETYENKGVGFYSMHPGWAETPGVAKSLPSFSKSLSGKLRTSEEGADTVIWLALQPKEKLVSGAFYFDRAEAPKHLAFAATSGSHALINSVVDSLHSMVSRFV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2819 342 PANTHER RETINOL DEHYDROGENASE 27 331 - -
Lja2g2819 342 Pfam short chain dehydrogenase 66 265 IPR002347 -
Lja2g2819 342 PRINTS Glucose/ribitol dehydrogenase family signature 65 82 IPR002347 -
Lja2g2819 342 PRINTS Glucose/ribitol dehydrogenase family signature 274 294 IPR002347 -
Lja2g2819 342 PRINTS Glucose/ribitol dehydrogenase family signature 141 152 IPR002347 -
Lja2g2819 342 PRINTS Glucose/ribitol dehydrogenase family signature 225 244 IPR002347 -
Lja2g2819 342 PRINTS Glucose/ribitol dehydrogenase family signature 246 263 IPR002347 -
Lja2g2819 342 Gene3D - 50 338 - -
Lja2g2819 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 62 309 IPR036291 -
Lja2g2819 342 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 27 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2819 Lja-Chr2 44201770 44206124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2819 61 200 Miscellaneous Gene Families AT2G29340 34.247 5.00e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2819 K11168 - gmx:100775215 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2819 2 44201770 44206124 Lja2g2819 2 44201770 44206124 ECH