Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2747 ATGGCTGCGGAGGAAGAAAGCGCGGTGAAGGAGCCTCTGGATCTCATTCGGCTCAGCCTCGACGAGCGTATCTACGTCAAGCTTCGTTCTGACAGAGAGCTTCGCGGCAAGCTTCATGCTTATGATCAGCATCTCAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACTGTGGAAATTGATGATGAGACATATGAAGAAATTGTGAGGACTACAAAGAGAACAGTTCCTTTCCTGTTTGTTAGAGGAGATGGGGTGATATTGGTTTCTCCACCATTGAGGACTGCATGA 294 0.4558 MAAEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2747 97 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 1 97 - -
Lja2g2747 97 Gene3D - 2 94 - -
Lja2g2747 97 SMART Sm3 14 92 IPR001163 -
Lja2g2747 97 CDD LSm3 11 92 IPR034105 GO:0000398|GO:0003723
Lja2g2747 97 Pfam LSM domain 16 92 IPR001163 -
Lja2g2747 97 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 1 97 IPR040002 GO:0003723
Lja2g2747 97 SUPERFAMILY Sm-like ribonucleoproteins 11 93 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2747 Lja-Chr2 41432130 41434675 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2747 K12622 - egr:104449601 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2747 2 41432130 41434675 Lja2g2747 2 41432130 41434675 ECH