Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2708 ATGAAACCTCCTCTGTCTCGAAACATTTCCAAATTGCAAGCATTGGTTTCTTCATTCCAAAAATCACTAGCATCCTTTCAGAGCCCAGTTATTGCTGTGGAACTTCTGGGCAAAGCACTAGACCAATACCCAGATATTATAGCCTTGAAAAATGTCCACACCAAGCTTATTTATCTCAATTCTCATGAAAACCCATCTCTGGGAATCAAACTCATGAGAGCCTATGCTGCCTGTGGAGAACCAGGGACGGCACGCAAGGTGTTCGATGAAATTTCTGAGAGGAATGTTGTTTTCTACAATGTCATGATCAGAAGCTATGTGAATAATCGTTGGTATAATGACGCGTTGCTTGTTTTCAGAGAGATGGTTAATGGTGGGTTTAGACCGGACAATTATACCTACCCTTGTGTCCTGAAGGCGTGCTCTTGCTCTGACAATTTGAGGTTTGGGTTGCAGCTTCATGGAGCTATGTTGAAGGTTAGGCTGGATTGGAATTTGTTTGTCGGGAACGGTCTCATTTCTATGTACGGGAAATGTGGTTGCTTGCTGGAGGCAAGGTATGTTCTTGATGAGATGCCGAGGAGGGATGTTGTGTCGTGGAACTCAATGGTTGCAGGCTATGCGCAGAATATGCGGTTTGATGATGCATTGGAAGTTTGTCGGGAAATGGATGATTTGGGACAAAAACCTGATGCTGGTACAATGGCGAGTCTCATGCCAGCAGTAACTAACACTTCGTCGGACAATGTTTTGTATGTTAAGGATATTTTTATAAATTTGGAGAAGAAGAGTTTGGTCTCGTGGAATGTGATGATAACTGTCTATATGAAAAATTCCATGCCGGGAAATGCTATAGATTTGTATTTGCAAATGGAGAAAAGTGAAGTCGAGCCAGATGCAATCACTTGTGCTAGTGTTCTTCCAGCATGTGGTGATCTTTCAGCTTTGTTGTTAGGAAGGAGGATTCACGAATATGTTGAGAGGAAGAAACTACGTCCGAATTTGCTGCTGGAAAATTCATTGATAGACATGTACGCTAGGTGCGGATGTCTAGAAGATGCACAAAAGGTCTTTGACAAAATGAAGTTTCGTGATGTTGCATCGTGGACATCATTGATATCTGCCTATGGTATGACTGGGCAAGGCTGCAATGCTTTGGCACTTTTCTCAGAAATGCAAAATTCAGGTATAAGTCCAGATCATATCGCCTTTGTCGCAATTCTCTCAGCTTGTAGCCATTCAGGATTATTGGAAGAAGGGAAAGTTTACTTTAAGCAGATGACTGATGATTACAGAATAACACCAAGAATTGAACACTTTGCGTGCTTGGTAGATCTTTTAGGACGAGCTGGGCGAGTAGATGAGGCCTATGATGTCATCAAACAGATGCCATTAGAACCTAATGAAAGAGTTTGGGGGACACTACTTAGTTCTTGCAGGGTGTACTCCAACATGGATATTGGCCTCTTAGCAGCTGACAACCTACTTCAGTTGTCTCCTGAGCAATCAGGTTATTATGTGTTGTTATCTAATATTTACGCAAAGGCCGGTAGATGGAAAGAAGTAACAGAAGTTAGATCATTAATGAAGAGAAGAAGAATTCGGAAAACGCCCGGCATCAGCAATGTTGAGCTGAACAGTCAGGTTCACACATTTCTCGCCGGTGACACGTCGCATCCGCAGTCAAAGGAGATCTATGAAGAGCTATATGTGCTGGTGGGAAAGATGAAGGAGTTGGGTTATGTTCCTGAAACTGATTCTGCACTTCATGATGTGGAGGAGGAGGATAAGGAAGGCCATCTAGCTGTTCACAGTGAAAAGCTAGCTATTGTGTTTGCTCTTTTGAATACCCATGAGTCTCCGATCAGAATTACCAAAAACCTTCGTGTTTGTGGAGATTGCCATATTGCTGCTAAGCTTATCTCCAAGATAGTTGGACGTGAAATTGTTATTAGGGACACCAATCGATTCCACCATTTTAAGGATGGCTTATGCTCATGTGGTGATTATTGGTGA 2016 0.4251 MKPPLSRNISKLQALVSSFQKSLASFQSPVIAVELLGKALDQYPDIIALKNVHTKLIYLNSHENPSLGIKLMRAYAACGEPGTARKVFDEISERNVVFYNVMIRSYVNNRWYNDALLVFREMVNGGFRPDNYTYPCVLKACSCSDNLRFGLQLHGAMLKVRLDWNLFVGNGLISMYGKCGCLLEARYVLDEMPRRDVVSWNSMVAGYAQNMRFDDALEVCREMDDLGQKPDAGTMASLMPAVTNTSSDNVLYVKDIFINLEKKSLVSWNVMITVYMKNSMPGNAIDLYLQMEKSEVEPDAITCASVLPACGDLSALLLGRRIHEYVERKKLRPNLLLENSLIDMYARCGCLEDAQKVFDKMKFRDVASWTSLISAYGMTGQGCNALALFSEMQNSGISPDHIAFVAILSACSHSGLLEEGKVYFKQMTDDYRITPRIEHFACLVDLLGRAGRVDEAYDVIKQMPLEPNERVWGTLLSSCRVYSNMDIGLLAADNLLQLSPEQSGYYVLLSNIYAKAGRWKEVTEVRSLMKRRRIRKTPGISNVELNSQVHTFLAGDTSHPQSKEIYEELYVLVGKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTHESPIRITKNLRVCGDCHIAAKLISKIVGREIVIRDTNRFHHFKDGLCSCGDYW* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2708 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 664 - -
Lja2g2708 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Lja2g2708 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 13 664 - -
Lja2g2708 671 Pfam E+ motif 549 570 IPR046849 -
Lja2g2708 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 364 IPR002885 -
Lja2g2708 671 Pfam E motif 482 544 IPR046848 -
Lja2g2708 671 Pfam DYW family of nucleic acid deaminases 580 671 IPR032867 GO:0008270
Lja2g2708 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Lja2g2708 671 Gene3D Tetratricopeptide repeat domain 249 316 IPR011990 GO:0005515
Lja2g2708 671 Gene3D Tetratricopeptide repeat domain 317 418 IPR011990 GO:0005515
Lja2g2708 671 Gene3D Tetratricopeptide repeat domain 148 248 IPR011990 GO:0005515
Lja2g2708 671 Gene3D Tetratricopeptide repeat domain 49 147 IPR011990 GO:0005515
Lja2g2708 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Lja2g2708 671 Pfam PPR repeat family 94 141 IPR002885 -
Lja2g2708 671 Pfam PPR repeat family 264 310 IPR002885 -
Lja2g2708 671 Pfam PPR repeat family 195 239 IPR002885 -
Lja2g2708 671 Pfam PPR repeat family 365 412 IPR002885 -
Lja2g2708 671 Pfam PPR repeat 442 463 IPR002885 -
Lja2g2708 671 Pfam PPR repeat 339 364 IPR002885 -
Lja2g2708 671 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Lja2g2708 671 TIGRFAM PPR: pentatricopeptide repeat domain 170 198 IPR002885 -
Lja2g2708 671 TIGRFAM PPR: pentatricopeptide repeat domain 198 232 IPR002885 -
Lja2g2708 671 TIGRFAM PPR: pentatricopeptide repeat domain 339 366 IPR002885 -
Lja2g2708 671 TIGRFAM PPR: pentatricopeptide repeat domain 98 130 IPR002885 -
Lja2g2708 671 TIGRFAM PPR: pentatricopeptide repeat domain 440 463 IPR002885 -
Lja2g2708 671 TIGRFAM PPR: pentatricopeptide repeat domain 368 400 IPR002885 -
Lja2g2708 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Lja2g2708 671 Gene3D Tetratricopeptide repeat domain 419 568 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2708 Lja-Chr2 39389094 39391170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2708 84 671 Glycoside Hydrolase AT3G49170 39.461 5.28e-146 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2708 - - gmx:100787841 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2708 2 39389094 39391170 Lja2g2708 2 39389094 39391170 ECH