Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2698 ATGGCTTCCGATCTCGAAGCCAAAGCCAAAGAGGCCTTCGTGGAAGACCACTTTGAACTAGCGGTGGAGCTTCTCACTCAGGCCATTGATGTCGACCCCAAGCATGCCGAACTCTATGCAGACCGTGCCCAGGCGAACATCAAACTCAACAACTTCACCGAGGCTATTGCTGATGCAAACAAAGCAATTGAGTTGAATCCTTCTCTATCAAAGGCATATTTGCGCAAAGGTACTGCATGCATGAAGCTTGAGGAATACCAGACTGCTAAGACTGCTCTGGAGATGGGTGCTACATTGTCTACAGACAAATCAAGATTTCTAAATTTGATCAAAGAATGTGATAAACTCATTGCAGAAGAATCTTATCCGATGCCTATACAGGAAAAGGCCACAACACTGGATGCATCTCCAAAAGATGTTCAGCCGGATAAAGATCTTACAGAGCAGCCAATAGTAGCAGTGGCTAAACCTAAATATAGGCATGAATTCTACCAGAAACCGGATGAAGTGGTTGTAACCATATTTGCAAAGGGCGTATCAAAGGAAAACATTACTGTTGATTTTGGTGAACAAATATTAAGTGTTAGCATTAATGTCCCTGGAGAAGATGCATATACTTTTCAGCCTCGCTTATTTGGAAAGATCATATCTTCCAGATGCCGGTATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTAGGGAAAGCAGAACCTATTCACTGGAATTCACTAGAATTCACCAGAGAGGTTGCAGTTGCACAGAGGGCTAATATTTCTTCTGTTATTGGAAGTCAAAGACCTACTTACCCATCCTCAAAACCAAAAAAAGATTGGGATAAGCTTGAAGCGCAAGTTAAAAAAGAGGAGAAGGACGAAAAACTTGATGGTGATGCAGCGCTCAACAAATTTTTCCGGGAAATATATCAAGATGCAGATGAGGATACAAGAAGGGCAATGAAAAAGTCATTTGTGGAGTCTAATGGAACAGTACTGTCAACAAACTGGAAAGAAGTGGGAACAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAATTGAGGAAATGGGAATATTAA 1077 0.4188 MASDLEAKAKEAFVEDHFELAVELLTQAIDVDPKHAELYADRAQANIKLNNFTEAIADANKAIELNPSLSKAYLRKGTACMKLEEYQTAKTALEMGATLSTDKSRFLNLIKECDKLIAEESYPMPIQEKATTLDASPKDVQPDKDLTEQPIVAVAKPKYRHEFYQKPDEVVVTIFAKGVSKENITVDFGEQILSVSINVPGEDAYTFQPRLFGKIISSRCRYEVLSTKIEIRLGKAEPIHWNSLEFTREVAVAQRANISSVIGSQRPTYPSSKPKKDWDKLEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELRKWEY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2698 358 SUPERFAMILY HSP20-like chaperones 148 252 IPR008978 -
Lja2g2698 358 Pfam CS domain 160 235 IPR007052 -
Lja2g2698 358 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lja2g2698 358 Pfam Tetratricopeptide repeat 7 68 - -
Lja2g2698 358 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Lja2g2698 358 Gene3D Tetratricopeptide repeat domain 1 129 IPR011990 GO:0005515
Lja2g2698 358 ProSiteProfiles SGS domain profile. 268 358 IPR007699 -
Lja2g2698 358 SMART tpr_5 2 35 IPR019734 GO:0005515
Lja2g2698 358 SMART tpr_5 70 103 IPR019734 GO:0005515
Lja2g2698 358 SMART tpr_5 36 69 IPR019734 GO:0005515
Lja2g2698 358 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
Lja2g2698 358 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Lja2g2698 358 Coils Coil 42 62 - -
Lja2g2698 358 CDD p23_CS_SGT1_like 162 245 - -
Lja2g2698 358 Pfam SGS domain 276 356 IPR007699 -
Lja2g2698 358 Gene3D - 157 247 IPR008978 -
Lja2g2698 358 PANTHER PHOSPHATASE-RELATED 1 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2698 Lja-Chr2 38683642 38690216 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2698 K12795 - gmx:100780174 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2698 2 38683642 38690216 Lja2g2698 2 38683642 38690216 ECH