Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2666 ATGTACACCCTTCGGTCACTATTATATGCAAAAGTTGCAGGGATTATTTTTGCAGTGGTGTTATTGGGGTCACTAGGAGTGAAGGTAGCAGAATGCAGAGTAGTCAGAAGATTACAGGATCTTGAGTACCCTGCTATCAACTGCAGAAAACATAGTGCAGTCTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCTAACACCAAGGCCTTTCAATCTGCAATCAGCAATCTCAGCCACTATGCAAATGATGGCGGGGCTATGCTGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACTAGCCATTTCACACTTTTTCTCCAAAAAGAGGCTGTCATTCTTGGATCTCAGGTTGAATCAGAGTGGCCCTCACTTCCTGTTCTTCCATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACAAACCTCACTGATGTTGTTATTACTGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTACACTCACCAGGCCTTACATGATTGAGATTATGTACTCTAATCAAATTCAAATCTCGAATCTCACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCTAACACAGATGGAATTGATCCTGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCATATCCCCAGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATCCAAGACATTAGAGCAGAAGACCTCACTGCTATCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGAATGAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTACCATCACTGGAATCAATTATAGAGATGTGATTGCGAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCACTGATGTTCACGGTGTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCAGCAGACAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA 1434 0.4191 MYTLRSLLYAKVAGIIFAVVLLGSLGVKVAECRVVRRLQDLEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAISNLSHYANDGGAMLVVPPGKWLTGSFNLTSHFTLFLQKEAVILGSQVESEWPSLPVLPSYGRGRDAPAGRFSSLIFGTNLTDVVITGHNGTIDGQGSYWWDKFHKGQFTLTRPYMIEIMYSNQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGIDPDSCSNTRIEDCYIVSGDDCIAVKSGWDEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTAINTQSAVRIKTAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGIANDPFTGICISNANIEKVGKKLAWNCTDVHGVTSNVSPEPCALLQEKPGKFDCPFPADKLPIESVQLKTCSFKSLSLF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2666 477 PANTHER PECTIN LYASE-RELATED 16 470 - -
Lja2g2666 477 Gene3D - 34 438 IPR012334 -
Lja2g2666 477 SUPERFAMILY Pectin lyase-like 48 470 IPR011050 -
Lja2g2666 477 Pfam Glycosyl hydrolases family 28 149 430 IPR000743 GO:0004650|GO:0005975
Lja2g2666 477 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 16 470 - -
Lja2g2666 477 Pfam Pectate lyase superfamily protein 56 110 IPR024535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2666 Lja-Chr2 37518408 37522129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2666 41 469 Glycoside Hydrolase AT3G48950 70.115 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2666 - - gmx:100785005 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2666 2 37518408 37522129 Lja2g2666 2 37518408 37522129 ECH