Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2651 ATGGCGTCTCTGAAGCTATGCTCTTTTACCCACCTCTTCTCCTCTCCCTCTTCCGCCACCATTCCTCGTCGTTCTCCGGCGTTCCTACGGCGGCGCAGCCACTTTCATTTCCGGCCACGGCCGCTCGCCGCCTCCTTCTCCGCCCAAAGCGCGGCGTCGGACACACAGGACCGAGTCGACAACTCGAAGAACCGAGTCCCCGACCGAGTCATCACGCCCAGGTCACAGGACTTCAATGCGTGGTACCTTGATATCATAGCCAACGCCGAGCTTGCCGATTACGGTCCGGTTCGTGGCACCATGGTCATTCGTCCCTACGGTTACGCCATTTGGGAATCAATTCAGGACTTTTTGAATGTGAAGTTCAAGGAGACTGGGCATAGTAACATGTATTTTCCACAGTTTATCCCATACTCATTTATAGAGAAAGAAGCAAGTCATGTTGAGGGTTTCAGTCCTGAGCTAGCGCTAGTTACTATTGGGGGTGGAAAGGAACTTGAAGAGAAACTCGTGGTGCGGCCTACAAGTGAAACCATTGTGAATCACATGTTCACTCAGTGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAACCAGTGGGCGAATGTTACAAGATGGGAGATGCGCACTAAACCATTTGTGAGAACTCTTGAATTTCTTTGGCAAGAAGGTCATACTGCTCATGCCACTCCAGAAGAGGCAGAAAATGAGGCTATACAGATGATTGACATTTATACGAAATTTGCATATGAGCAAACTGCAATACCTGTTATTCCAGGTCGCAAATCTAAAGTGGAAACATTTGCTGGTGCTTGTAAGACCTATACTATTGAGGCTATGATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGCCACAACCTTGGGCAAAACTTTGCCCGTGCGTTTGGAACACTGTTCACAGATGAAAATGGACAAAGGGAATACGTTTGGCAGACATCATGGGCGATAAGCACCCGTTTTGTTGGAGGTATCATCATGACACATGGGGATGATATAGGCCTAATGCTCCCCCCCAAGATTGCACCGATACAGGTGGTAATTGTACCCATTTGGAAGAAGGATGGCGAAAAAGAAGCAGTTTTAAATGCAGCAGCATCTCTAAAGGAGGTCCTTCACAGCTCTGGAATCAGAGTTAAACTTGATGACTCAGATCAAAGAACCCCTGGGTGGAAATTCAATTTCTGGGAAATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGTCAAGCGGAAGTGTGGTGATATCCAGGAGAGATATCCCTGGGAAGCAGGGGAAAGTGTTTGGAATTTCTATGGAGCCTTCGATTTTGGAGGCTTATGTAAAAGACAAGTTGGATGAGATACAGTCTTCTCTTTTGGAAAGAGCAATTGCATTTCGAGATAGCAACATTGTAGATGTGAGCACATACGATGATCTTAAAGCTGCAATATCACAAGGCAAATGGGCAAGGGGACCTTGGTCTGCAAGTGATGAAGACGAGTTAAAAGTAAAAGAGGAAACTGGAGCAACTATCAGGTGTTATCCTTTTGAACAGCCACAGGGGATTAAAAGATGCTTGATGACTGGAGATCCAGCTGAAGAAGTGGCTATTTTTGCCAAATCTTACTAA 1647 0.4639 MASLKLCSFTHLFSSPSSATIPRRSPAFLRRRSHFHFRPRPLAASFSAQSAASDTQDRVDNSKNRVPDRVITPRSQDFNAWYLDIIANAELADYGPVRGTMVIRPYGYAIWESIQDFLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAENEAIQMIDIYTKFAYEQTAIPVIPGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFARAFGTLFTDENGQREYVWQTSWAISTRFVGGIIMTHGDDIGLMLPPKIAPIQVVIVPIWKKDGEKEAVLNAAASLKEVLHSSGIRVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSSGSVVISRRDIPGKQGKVFGISMEPSILEAYVKDKLDEIQSSLLERAIAFRDSNIVDVSTYDDLKAAISQGKWARGPWSASDEDELKVKEETGATIRCYPFEQPQGIKRCLMTGDPAEEVAIFAKSY* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2651 548 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 165 334 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja2g2651 548 Gene3D - 477 548 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 SUPERFAMILY Class II aaRS and biotin synthetases 77 340 IPR045864 -
Lja2g2651 548 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 98 346 IPR006195 -
Lja2g2651 548 PRINTS Prolyl-tRNA synthetase signature 200 208 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 PRINTS Prolyl-tRNA synthetase signature 170 181 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 PRINTS Prolyl-tRNA synthetase signature 209 220 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 PRINTS Prolyl-tRNA synthetase signature 129 147 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 CDD ProRS_anticodon_zinc 342 548 - -
Lja2g2651 548 Hamap Proline--tRNA ligase [proS]. 71 548 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 Pfam Prolyl-tRNA synthetase, C-terminal 482 548 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 Gene3D - 347 470 IPR036621 -
Lja2g2651 548 PANTHER PROLYL-TRNA SYNTHETASE 2 548 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 Pfam Anticodon binding domain 353 432 IPR004154 -
Lja2g2651 548 Gene3D Bira Bifunctional Protein; Domain 2 72 346 IPR045864 -
Lja2g2651 548 PANTHER BNAC09G28510D PROTEIN 2 548 - -
Lja2g2651 548 SUPERFAMILY C-terminal domain of ProRS 476 548 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 CDD ProRS_core_arch_euk 77 336 IPR033721 -
Lja2g2651 548 SUPERFAMILY Class II aaRS ABD-related 342 474 - -
Lja2g2651 548 SMART ProRS_C_1_2 482 548 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja2g2651 548 TIGRFAM proS_fam_I: proline--tRNA ligase 72 548 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2651 Lja-Chr2 37052835 37057985 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2651 K01881 - gmx:100815508 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2651 2 37052835 37057985 Lja2g2651 2 37052835 37057985 ECH