Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2647 ATGGTTCCTCCTCCTCGAGGTCGCGGTGGCAGTGGTGGGTTCAGAGGTAGAGGGAGAGGTGATGGAGGAAGAGGAGGAGGTAGAGGTACCCCTTTTAAGGCACGAGGTGGTGGTAGAGGAGGAGGCAGGGGAGGCCGCGGAGGAGGTAGAGGTGGCAGAGGTGGAGGAATGAAAGGAGGGAGCAGGGTTGTGGTTGAGCCTCACAGGCATGAGGGTATTTTCATTGCCAAGGGTGGTAAAGAAGATGCCCTTGTTACTAAGAATCTGGTTCCGGGTGAAGCTGTTTACAATGAGAAAAGGGTTACTGTGCAGAAAGAGGACGGTACAAAAGAGGAGTATAGGGTTTGGAACCCTTTTCGCTCCAAGTTGGCTGCTGCCATTCTTGGTGGGGTTGACAACATATGGATTAAACCTGGAGCCAAAGTTCTTTACCTAGGAGCTGCTTCTGGAACAACTGTTTCTCATGTGTCTGACATTGTTGGTCCAACAGGAGTTGTCTATGCAGTAGAATTTTCTCATAGAAGCGGGCGTGACTTGGTCAATATGGCAAAAAAGCGTACTAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCCAAGTACAGGATGTTGGTTGGAATGGTAGATGTGGTATTTTCTGATGTTGCTCAGCCTGATCAGGCAAGAATTTTAGGGCTGAATGCTTCATATTTTCTCAAAACTGGTGGCCATTTTGTCATTTCAATCAAGGCAAACTGCATAGATTCAACAGTGCCTGCGGAGACTGTTTTTGTTAATGAAGTCAACAAGCTGAAGGTAGATCAATTTAAGCCTGCTGAGCAAGTCACCCTTGAACCGTTTGAGCGGGACCATGCTTGTGTGGTTGGTGGGTACAGAGTGTCCAAGAAGAAGAAAGATGCTGAGTAG 909 0.4763 MVPPPRGRGGSGGFRGRGRGDGGRGGGRGTPFKARGGGRGGGRGGRGGGRGGRGGGMKGGSRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTGGHFVISIKANCIDSTVPAETVFVNEVNKLKVDQFKPAEQVTLEPFERDHACVVGGYRVSKKKKDAE* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2647 302 MobiDBLite consensus disorder prediction 1 62 - -
Lja2g2647 302 Pfam Fibrillarin 65 293 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 ProSitePatterns Fibrillarin signature. 164 178 IPR020813 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 5 301 - -
Lja2g2647 302 PIRSF Nop17p 32 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 PRINTS Fibrillarin signature 271 292 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 PRINTS Fibrillarin signature 84 103 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 PRINTS Fibrillarin signature 112 131 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 PRINTS Fibrillarin signature 189 218 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 PRINTS Fibrillarin signature 219 248 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 PRINTS Fibrillarin signature 164 181 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 PRINTS Fibrillarin signature 139 160 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 80 293 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 SMART Fibrillarin_2 65 294 IPR000692 GO:0003723|GO:0006364|GO:0008168
Lja2g2647 302 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 65 293 IPR029063 -
Lja2g2647 302 Gene3D Vaccinia Virus protein VP39 117 294 IPR029063 -
Lja2g2647 302 Gene3D Phosphorylase Kinase; domain 1 60 116 - -
Lja2g2647 302 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 5 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2647 Lja-Chr2 36917971 36922171 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2647 K14563 - gmx:100814656 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2647 2 36917971 36922171 Lja2g2647 2 36917971 36922171 ECH