Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2638 ATGTGGCCGTTCTGTAGAAAAGGGGCTTCTGGGTTTTCATCATCTTCCACAGCTGAGGATGTTACTCATGGAATCGATGGGAATGGTCTCGTTGCTATTGTTACAGGGGCTACCAGTGGTATTGGTGCTGAGACTACCCGTGTTCTTGCTTCGCATGGTGTCCATGTGATTATGGGGGTGAGAAATATGATTGTTGCACAAGATGTCAAAGATGCAATACTTAAGAAGATTCCCACAGCTAAAGTTGATGCCATTGAGTTAGACCTTAGCTCAATCGCATCTGTTCAGAATTTCGCATCAGAGTTCAATTCCTCTGGTCTTCCACTAAACATTCTGATAAACAATGCAGGTGTTCTGGCAACCCGTTTCGCACTGTCCAAAGACAACATTGAACTACACTTTGCCACAAATCATATAGGTCATTTTCTCTTAACAAATCTTCTGTTGGATACTATGAAGAAAACAGCACGCGAAAGTAAGAAAGAGGGGAGAATTGTTAATGTCTCCTCCGTCACTCACCGATATGTTGGCGGAATCAATTTTGATAAAATCAATGATCAATCAAGTTACTGCAGGTGGTTTGCATATGGGAAATCAAAGCTTGCAAACATATTACATGCCAATGAACTTGCAAGACATCTCAAGGAAGAAGGGGTGGATATTACTGCTAATTCTCTTGATCCAGGAGCCATTGTCACCAAGATTTTTCGTCGTCAACGTATAGTTTCTGGTCTAGTTAATACACTTGGGAGAGTCGTGTTTAAAAATGTACCTCAGGGAGCAGCAACAACATGCTATGTAGCATTGAACCCACAAGTCCAGGGAATCAGTGGCGAGTTCTTTCAAAATAGTAATCTTGCCAAAGCAAGTTCAAGGGGAAAAGACATTGATTTGGCCAAGAAACTCTGGGATTTCAGCATGAATTTGATTAAGCCGCAGGACACCCAGATATAA 954 0.4182 MWPFCRKGASGFSSSSTAEDVTHGIDGNGLVAIVTGATSGIGAETTRVLASHGVHVIMGVRNMIVAQDVKDAILKKIPTAKVDAIELDLSSIASVQNFASEFNSSGLPLNILINNAGVLATRFALSKDNIELHFATNHIGHFLLTNLLLDTMKKTARESKKEGRIVNVSSVTHRYVGGINFDKINDQSSYCRWFAYGKSKLANILHANELARHLKEEGVDITANSLDPGAIVTKIFRRQRIVSGLVNTLGRVVFKNVPQGAATTCYVALNPQVQGISGEFFQNSNLAKASSRGKDIDLAKKLWDFSMNLIKPQDTQI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2638 317 CDD retinol-DH_like_SDR_c_like 29 303 - -
Lja2g2638 317 PANTHER RETINOL DEHYDROGENASE 2 311 - -
Lja2g2638 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 284 IPR036291 -
Lja2g2638 317 Pfam short chain dehydrogenase 31 238 IPR002347 -
Lja2g2638 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Lja2g2638 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 196 215 IPR002347 -
Lja2g2638 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Lja2g2638 317 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 311 - -
Lja2g2638 317 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lja2g2638 317 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lja2g2638 317 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lja2g2638 317 PRINTS Glucose/ribitol dehydrogenase family signature 196 215 IPR002347 -
Lja2g2638 317 PRINTS Glucose/ribitol dehydrogenase family signature 219 236 IPR002347 -
Lja2g2638 317 Gene3D - 25 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2638 Lja-Chr2 36616056 36629181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2638 31 258 Acyl Lipid Metabolism Gene Families AT1G62610 29.218 1.94e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2638 - - jre:109004519 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2638 2 36616056 36629181 Lja2g2638 2 36616056 36629181 ECH