Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2637 ATGTGTTCTTCGTCTGGGTTTTTATGGTCTTCAACCGCAGAGGAGGTTACTCAAGGGATTGATGGAAGTGGCCTCACTGCTATTGTTACAGGAACAACCCATGGTATTGGCACTGAGACTGCAAGAGTTCTTGCACTGCGAGGTGTTCATGTGATTATGGGGGTAAGAAATATGATTGCTGGAAAAAATCTCAAAGAAGCAATAATTAAGGAGATTCCCACAGCTAAAGTTGAAGCAATGGAGCTAGATCTTAGTTCAATGGATTCAATCCGGAAATTTGTATCAGAGTTTAATTCTTCTGGTCTTCCATTGAACATCCTCATAAACAATGCAGGAATTTGTGCAGCGCCTTTCACACTGTCCAAAGACAACATTGAACTACAGTTTGCCACTAATCACTTAGGTCATTTTCTTTTAACAAATCTTCTATTGGATACTATGCGGAAAACAGCACGTGAAAGCAAGAAAGAGGGAAGAATTGTTAATCTATCCTCTGATGGTCACCGTTATATATATCCTGAAGGAATCTCTTTTGATAAAATTAATGATGAGTCAAGCTACCAGAGATGGAAGGCATATGGTCAATCAAAGCTTGCTAACATTTTACATGCCTATGAACTTGGAAGACGTCTCAAGGAAGAAGGAGTAGATATTACTGCAAATTCTCTTCATCCGGGAGCGATTATCACCGGTATTGTAAATCTTGAGGTTGGTCTAACTATGCCAGCCGAGATGCATACTGTGCTTGGGAAATACGAGATTAAAAGTGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCATCCACAAGTGAAGGGGATTAGTGGCAAGTATTTTTCAGACATTAAATTGGCTGAACCAAGCTCACATGGAACAGACACTGAGTTGGCAAAGAAGCTCTGGGATTTCAGCATGAAATTAACTGAATAG 936 0.4049 MCSSSGFLWSSTAEEVTQGIDGSGLTAIVTGTTHGIGTETARVLALRGVHVIMGVRNMIAGKNLKEAIIKEIPTAKVEAMELDLSSMDSIRKFVSEFNSSGLPLNILINNAGICAAPFTLSKDNIELQFATNHLGHFLLTNLLLDTMRKTARESKKEGRIVNLSSDGHRYIYPEGISFDKINDESSYQRWKAYGQSKLANILHAYELGRRLKEEGVDITANSLHPGAIITGIVNLEVGLTMPAEMHTVLGKYEIKSVQQGAATTCYVALHPQVKGISGKYFSDIKLAEPSSHGTDTELAKKLWDFSMKLTE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2637 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 287 IPR036291 -
Lja2g2637 311 Gene3D - 17 311 - -
Lja2g2637 311 Pfam short chain dehydrogenase 26 173 IPR002347 -
Lja2g2637 311 PRINTS Glucose/ribitol dehydrogenase family signature 102 113 IPR002347 -
Lja2g2637 311 PRINTS Glucose/ribitol dehydrogenase family signature 26 43 IPR002347 -
Lja2g2637 311 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Lja2g2637 311 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Lja2g2637 311 CDD retinol-DH_like_SDR_c_like 24 303 - -
Lja2g2637 311 PANTHER RETINOL DEHYDROGENASE 3 310 - -
Lja2g2637 311 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 3 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2637 Lja-Chr2 36607977 36613417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2637 28 178 Acyl Lipid Metabolism Gene Families AT1G62610 30.247 2.13e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2637 - - cam:101490020 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2637 2 36607977 36613417 Lja2g2637 2 36607977 36613417 ECH