Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2626 ATGGGAACATCAGTGCAGGTAAAGCCACTGTGTGGAGTGTACAACGAGAACCCTCTCTCGTACTTGGTCTCCATTGATGGCTTCAACTTCCTCATCGACTGTGGTTGGAACGACCACTTCGACCCTTCCCTTCTTCAACCCCTCTCCAGGGTAGCATCAACTATAGATGCTGTCTTGCTTTCGCACCCGGATACGCTTCACCTTGGTGCCCTCCCATATGCTATGAAGCAGCTTGGACTCTCTGCGCCTGTTTTTTCAACTGAGCCTGTCTACAGATTGGGCCTTCTCACTATGTATGACCAGTTCCTCTCAAGAAAGCAAGTGTCGGAGTTTGATCTGTTCACGCTAGATGATATTGATTCTGCTTTCCAAAGTGTAACAAGGCTAACATACTCTCAGAATCATCATCTCTCAGGCAAGGGAGAGGGAATTGTGATTGCACCTCATGTTGCTGGGCATCTTTTGGGAGGTACGATATGGAAAATTACAAAGGATGGTGAGGACGTCATATATGCTGTTGATTTTAATCATCGGAAAGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGCGGCCAGCAGTTCTAATAACTGATGCTTATAATGCTTTGAACAATCAGCCTTACAGACGCCAAAAGGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTTAGGTCAGGTGGCAATGTATTGCTCCCTATTGACACTGCAGGACGGGTGTTGGAACTTATTCTGATGCTAGAATCGTATTGGGCTGAAGAAAACTTGGTCTACCCCATATATTTTCTTTCATATGTTTCATCCAGCACAATTGATTATGTAAAGAGTTTCCTTGAGTGGATGAGTGATACCATTGCAAAGTCTTTTGAACAAACGCGTGAAAATATATTTCTTTTGAAGTATATTACACTTCTGGTTAACAAGACTGAGCTTGATAATGTTCCAGATGGTCCAAAGGTTGTTCTAGCATCCATGGCAAGTTTGGAAGCAGGTTTTTCTCATGATATATTTGTTGAGTGGGGCAGTGATGTAAAAAATCTCGTGCTTTTTACTGAAAAAGGCCAGTTTGCCACACTAGCTCGTATGCTTCAGGCTGATCCACCTCCAAAAGCTGTCAAAGTCACTGTGTCCAAGCGTGTTCCTTTGGTTGGCGATGAGCTAATTGCCTATGAGGAAGAGCAAAATCGAATAAAGAAAGAAGAAGCTTTAAAAGCCAGTCTTATAAAGGCGGAAGAATTGAAAGCATCTCATGGGGCTGATAGTAATACAAGTGATCCAATGGTCATTGATACTGGCAATAATCTTATAGCACCAGAAGTGGCTGGTCCACGAGGTGGAGGATACCGGGACATATTTGTTGATGGATTTGTTCCCCCTTCAACAAGTGTTGCCCCAATGTTTCCCTGTTATGAAAATACGTCTGAGTGGGATGATTTTGGTGAAGTCATAAATCCAGATGATTATGTAATTAAGGACGAAGACATGGACCAGACAGCAATGCATGTAGGAGGTGATATAAATGGAAAACTAGATGAAGGTGCTGCGAGTTTAATACTTGATACAAAGCCATCAAAAGTCATATCTGATGAAAGGACTGTGCAAGTCAGGTGTTCCTTGGTATACATGGACTTTGAAGGCCGTTCAGATGGAAGATCCATTAAAAATATTCTCTCCCATGTGGCTCCCCTGAAGCTGGTTTTGGTGCATGGGTCAGCTGAAGCTACGGAGCATCTGAAGCAGCATTGCCTGAAGAATGTGTGTCCTCACGTTTATGCTCCCCAAATTGAAGAGACAATTGATGTTACCTCTGATTTATGTGCTTATAAGGTTCAACTATCTGAGAAGCTAATGAGTAATGTACTCTTCAAGAAGCTGGGAGATTATGAAGTAGCTTGGGTTGATGCTGAAGTAGGGAAAGCAGAAAATGACACGCTCTCGCTGCTGCCTGTTTCCGGAGCAACTCCTCCGCATAAATCTGTTCTTGTTGGTGATTTGAAATTGGCAGATTTCAAGCAGTTCCTCTCCAGCAAGGGTGTTCAGGTGGAATTTGCTGGTGGGGCTTTGCGTTGCGGTGAATATGTAACTGTCCGGAAGGTTGGGGATGCAAGTCAGAAGGGTGCTGGTTCTGGTACACAGCAAATTATTATTGAAGGCCCCCTGTGTGAAGATTACTATAAAATTCGCGAATATCTCTATTCACAGTTTTATTTGCTTTAG 2223 0.43 MGTSVQVKPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRSGGNVLLPIDTAGRVLELILMLESYWAEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVNKTELDNVPDGPKVVLASMASLEAGFSHDIFVEWGSDVKNLVLFTEKGQFATLARMLQADPPPKAVKVTVSKRVPLVGDELIAYEEEQNRIKKEEALKASLIKAEELKASHGADSNTSDPMVIDTGNNLIAPEVAGPRGGGYRDIFVDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMDQTAMHVGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKAENDTLSLLPVSGATPPHKSVLVGDLKLADFKQFLSSKGVQVEFAGGALRCGEYVTVRKVGDASQKGAGSGTQQIIIEGPLCEDYYKIREYLYSQFYLL* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2626 740 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 739 IPR027075 GO:0005847|GO:0006378|GO:0006379
Lja2g2626 740 SMART Beta_Casp_2 242 365 IPR022712 -
Lja2g2626 740 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 534 586 IPR011108 -
Lja2g2626 740 Pfam Cleavage and polyadenylation factor 2 C-terminal 644 737 IPR025069 -
Lja2g2626 740 Pfam Beta-Casp domain 242 365 IPR022712 -
Lja2g2626 740 Pfam Metallo-beta-lactamase superfamily domain 22 188 IPR001279 -
Lja2g2626 740 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 603 IPR036866 -
Lja2g2626 740 Coils Coil 392 412 - -
Lja2g2626 740 CDD CPSF2-like_MBL-fold 9 203 IPR035639 -
Lja2g2626 740 Gene3D - 7 257 IPR036866 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2626 K14402 - gmx:100777002 1389.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2626 2 36044692 36053910 Lja2g2626 2 36044692 36053910 ECH