Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2602 ATGAACTCAATAACCATTTTGGGTCATAGGATGGTTCAGATAATTTCCCATTGTTTAAACATTTCCCGGAGATTTTGTGATCAACCCTTTCATGTTGATGATGGGGTTGTTAGCAGAGAGTTTGATTTGGTTGAGGAGCCTTTGAAGAAAATGTATGTAGCTTCGTGTGAGAGCGTGGATTTGAGCTACAAGAAGAATGATAGCTTTAGATACGGCGAACAGCGGTTTTCAGATTTGGGGATTGATGTTGAGAGGGTTCTTGAGGTTCTGCGGCGAGATTGCCTTGATTTTGATTTTAGGGCGGCCTTAGATGGGTTGCGTGTGAGGCCATCGTGGCTTCTTGTTAGAGAAGTCCTGTATGGGGTGTTGAGAGAAGTGAACGGTGAAAACAAGACCACAATCGCGAAAGTGGCATATAAGTTCTTTTTGTGGTGTGATCAGCAGGAGGGGTATGGGCACACTCCTAACACTTATCACTTGCTCATGCAGATATTCGCGGAGTGCGATGAGTTTAAGGCAATGTGGAGGCTTGTCGATGAGATGATTAAGAAAGGTTTTCCTGCCACTGCCCGCACTTTCAACATTTTGATATGTAATTGTTGCGAGGCAGGTTTCGCTAGGAAGGTGGTGGTAAAGTTCATAAAGTCAAAGTCGTTTAACTACCGGCCATTTAAGCACTCCTATAATGCAATTCTCCATTCTCTTCTTGTTTTAAAGCAGTACAAATTGATTGAGTGGGTTTATAGACAGATGTTGCTCGAGGGTCTATCTTCGGATGTTTTAACTTATAATATTGTCATGCTTGCCAAGTACAGACTTGGGAAGTGGTACCAGCTCGAGAGGCTGCGCGATGAGATGTGGATAAATGGCCTTTATCCGGATTTTCATACTTATAACATTTTTCTTCATGTTCTTGGTAAAGGAGACAAACCGTTTGCTGCTCATAAGCTTTTAGATGAAATGAGAGAAAGAGGTATAGAGCCAACTGTTCTTCATTTCACCACGCTGATAGATGGACTGAGCAGAGCAGGAAATCTGGATGCTTGCAGATATTTTTTTGATGAAATGGTAAAGCATGGATGCGTGCCAGATGTCGTGGCTTACACTGTAATGATCACGGGGTATGTGGTGGCTGGTGAGCTTGAGAAAGCTCAGGAAATGTTTGATGAAATGATTTCTAGAGGACAAATTCCTAATGTGTTTACTTATAATTCCATGATTCGTGGATTATGTTTGGCGGGAAAGTTTGATGAAGCATGCTTGATGCTCAAGGAAATGGAAACTAAAGGTTGTAGTCCAAACTTTGTTGTCTATAGTACATTAGTGAGTAATCTGCGGAATGCTGGAAAGCTTTCTCTAGCTCGTAAAGTGATAAAACAGATGAAGCGGAAGGGGAAATGTGTTCACCATATTTCAAAGTTCAAAGGGAAAGGGTATAAGAGATAG 1446 0.4177 MNSITILGHRMVQIISHCLNISRRFCDQPFHVDDGVVSREFDLVEEPLKKMYVASCESVDLSYKKNDSFRYGEQRFSDLGIDVERVLEVLRRDCLDFDFRAALDGLRVRPSWLLVREVLYGVLREVNGENKTTIAKVAYKFFLWCDQQEGYGHTPNTYHLLMQIFAECDEFKAMWRLVDEMIKKGFPATARTFNILICNCCEAGFARKVVVKFIKSKSFNYRPFKHSYNAILHSLLVLKQYKLIEWVYRQMLLEGLSSDVLTYNIVMLAKYRLGKWYQLERLRDEMWINGLYPDFHTYNIFLHVLGKGDKPFAAHKLLDEMRERGIEPTVLHFTTLIDGLSRAGNLDACRYFFDEMVKHGCVPDVVAYTVMITGYVVAGELEKAQEMFDEMISRGQIPNVFTYNSMIRGLCLAGKFDEACLMLKEMETKGCSPNFVVYSTLVSNLRNAGKLSLARKVIKQMKRKGKCVHHISKFKGKGYKR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2602 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Lja2g2602 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Lja2g2602 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Lja2g2602 481 Pfam PPR repeat family 293 341 IPR002885 -
Lja2g2602 481 Pfam PPR repeat family 157 201 IPR002885 -
Lja2g2602 481 Pfam PPR repeat family 363 411 IPR002885 -
Lja2g2602 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Lja2g2602 481 Gene3D Tetratricopeptide repeat domain 82 236 IPR011990 GO:0005515
Lja2g2602 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Lja2g2602 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Lja2g2602 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Lja2g2602 481 Gene3D Tetratricopeptide repeat domain 391 465 IPR011990 GO:0005515
Lja2g2602 481 PANTHER OS10G0506000 PROTEIN 1 476 - -
Lja2g2602 481 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Lja2g2602 481 TIGRFAM PPR: pentatricopeptide repeat domain 366 400 IPR002885 -
Lja2g2602 481 TIGRFAM PPR: pentatricopeptide repeat domain 157 188 IPR002885 -
Lja2g2602 481 TIGRFAM PPR: pentatricopeptide repeat domain 436 465 IPR002885 -
Lja2g2602 481 TIGRFAM PPR: pentatricopeptide repeat domain 296 330 IPR002885 -
Lja2g2602 481 TIGRFAM PPR: pentatricopeptide repeat domain 401 434 IPR002885 -
Lja2g2602 481 Pfam Pentatricopeptide repeat domain 422 465 IPR002885 -
Lja2g2602 481 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 476 - -
Lja2g2602 481 Gene3D Tetratricopeptide repeat domain 246 388 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2602 Lja-Chr2 35354169 35357330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2602 76 465 Glycosyltransferase AT1G05670 26.055 1.66e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2602 - - mtr:MTR_6g045263 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2602 2 35354169 35357330 Lja2g2602 2 35354169 35357330 ECH