Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2575 ATGGGAAATTCATTTGGGTGCTCAGCTTCCGGCGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGATTTGGTGGAGGCCAAGATGCTTTTGGAATGCAACCCTGGTCTTGCCAAGTACTCAACCTTTGGTGGCCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCGCTGTTACTTGAGAATGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGACGGCTTTGATGCAAGCTTGCAGATATGGTCATTGGGAAGTTGTACAGACCCTTCTGCTCTTTAGATGCAATGTTATGAAAGCAGATTATCTCAGCGGAAGGACAGCTCTTCATTTTGCAGCTGTCAATGGGCATGTAAGATGCATTAGACTTGTTGTGGCTGACTTTGTTCCAAGTGCGCCTTTTGAAGCTTTACACTCTCGCACGGATCCTAACATGAGCAGACATGAGCATGGTGCCCTGTCCAAGTTTGTAAATAAAACAGCTGATGCTGGTATTACTGCTCTTCATATGGCTGCACTAAATGGGTATTTTGATTGCGTACAACTCCTACTTGATCTTAATGCAAATGTGTCAGCTGCAACATATCATTATGGAACTTCGATGGATTTAATAGGGGCTGGAAGCACTCCATTGCACTATGCTGCTTGTGGGGGGAATTTGAAATGCTGTCAGATCCTCCTTTCAAGAGGTGCGAGTCGGATGGCTTTGAATTGCAATGGGTGGCTTTCACTTGATGTTGCTAGGATGTGGGGGCGTCATTGGCTTGAACCGTTGCTGTCACCCACTTCTGATGTCATAATATCATCATTCCCTGCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTGCTCAACATAGCCAGAGAGTGTGGATTGCAATCATCTACAACCTCCTCTAATGAGATTGACTTTTGTGCTGTCTGTCTGGAGAGGCCATGTTCTGTGGCTGCAGAAGGATGTGGGCACGAGCTTTGTGTAAGATGTGCGCTCTATCTTTGCTCAACAGCCAATGTTTCTTCAGAAATGCAGGGCCCTCCCGGCTCTATCCCTTGTCCCCTTTGTAGGCATGGAATAATCTCTTTTGTCAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAGTTACATGCGTCTCTCAGCCTGTGCACCCCATGCATACAACATCCACGACGCGACCTAGATCCACAATCTCATACACCAGAGATTCGAAGAAACCGTGTAGCTTCTGTTTCTTCTGAGATGCTTTGCCCTGTCACCTGTACTCCATTTCCATCTGTAGCAATTCCTCTATGCACCTGCAATGATGGTCCTTGTCCGTCGTGCGAACCCCGAGACATAGAAACACAAGACGAGTCGCCTCGTCATTCGCAAGAAACAGATCAGGACAAAATGGAAGGGACAAGGCTGGGGAAAACAACTTGTTCAAACATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAGTGCAATTCAGAAATAAATGCCTGA 1509 0.4685 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPFEALHSRTDPNMSRHEHGALSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANVSAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLSRGASRMALNCNGWLSLDVARMWGRHWLEPLLSPTSDVIISSFPASNYLSLPLMSVLNIARECGLQSSTTSSNEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTANVSSEMQGPPGSIPCPLCRHGIISFVKLPGSQAKENKLHASLSLCTPCIQHPRRDLDPQSHTPEIRRNRVASVSSEMLCPVTCTPFPSVAIPLCTCNDGPCPSCEPRDIETQDESPRHSQETDQDKMEGTRLGKTTCSNMFWGRRSCSREHQCNSEINA* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2575 502 ProSitePatterns Zinc finger RING-type signature. 327 336 IPR017907 -
Lja2g2575 502 SUPERFAMILY RING/U-box 311 368 - -
Lja2g2575 502 Gene3D - 8 143 IPR036770 -
Lja2g2575 502 SUPERFAMILY Ankyrin repeat 14 266 IPR036770 -
Lja2g2575 502 SMART ANK_2a 111 142 IPR002110 GO:0005515
Lja2g2575 502 SMART ANK_2a 44 73 IPR002110 GO:0005515
Lja2g2575 502 SMART ANK_2a 77 106 IPR002110 GO:0005515
Lja2g2575 502 SMART ANK_2a 213 242 IPR002110 GO:0005515
Lja2g2575 502 SMART ANK_2a 170 199 IPR002110 GO:0005515
Lja2g2575 502 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Lja2g2575 502 PRINTS Ankyrin repeat signature 186 200 IPR002110 GO:0005515
Lja2g2575 502 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Lja2g2575 502 MobiDBLite consensus disorder prediction 450 474 - -
Lja2g2575 502 PANTHER HOMEOBOX PROTEIN WARIAI 1 502 - -
Lja2g2575 502 ProSiteProfiles Zinc finger RING-type profile. 312 362 IPR001841 -
Lja2g2575 502 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Lja2g2575 502 ProSiteProfiles Ankyrin repeat region circular profile. 213 239 - -
Lja2g2575 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 502 - -
Lja2g2575 502 SMART ring_2 312 361 IPR001841 -
Lja2g2575 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 384 IPR013083 -
Lja2g2575 502 ProSiteProfiles Ankyrin repeat region circular profile. 170 199 - -
Lja2g2575 502 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Lja2g2575 502 Pfam Ankyrin repeats (many copies) 162 191 IPR002110 GO:0005515
Lja2g2575 502 MobiDBLite consensus disorder prediction 450 473 - -
Lja2g2575 502 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Lja2g2575 502 Pfam Ankyrin repeat 214 244 IPR002110 GO:0005515
Lja2g2575 502 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Lja2g2575 502 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Lja2g2575 502 ProSiteProfiles Ankyrin repeat profile. 213 245 IPR002110 GO:0005515
Lja2g2575 502 Gene3D - 144 277 IPR036770 -
Lja2g2575 502 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2575 Lja-Chr2 34726988 34734619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2575 14 267 Miscellaneous Gene Families AT2G31820 30.620 8.40e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2575 K19044 - gmx:100812809 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2575 2 34726988 34734619 Lja2g2575 2 34726988 34734619 ECH