Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2574 ATGCGATTTTTCGGTTCTATCAGTACCAATTTCTTCAAGCGCAAGCTCGAAAATTTCCCACTGATTCACCATTTCATCAACCACAACCCCAGTTTCAATCTCAAATTCGTCAGAGAAAAGTCACAATCCACCGCAATCCCCAAGAAGCAACTGAGAATTCGCGACCATGGCTACGACAACTACATGGAGGTCGAGAAGAAAACCCGCAAGGTCCTCAAATTCCAGAACCTCATCCTCAACGAGCCCAGCCAATCGGTCCCTATCCCCCGCCTCGAAACCCTCGCGCGCCGCATCGGCTTCACGCGCCACGAGGCCGGCGCGTTCATTCTTAAGTTCCCGCATGTCTTTGAAATCTTCGAGCACCCTGTCCAGCGCATCCTCTTCTGCCGCCTCACGCGCAAGGCGGTCCTCCAGATTGATCGGGAGCGTCACGCGCTTGCGGGGTATCTCCCACGCGCCGTCACGAGCCTCCGGAAGCTAGTTATGATGGCCAATGGTCACCGCCTTCGCCTTGAGCATGTGAGGATCGCACGCGCCGTGTTGGGCCTGCCTGATGATTTCGAGCAATCGGTTGTTTTGAGGTACCCTGAATTTTTTCGGTTGGTTGATGCTGATGAAACTAGGAATAAGTACATTGAGCTTGTGGAGTTTGACCCTAGGTTAGCAACTTGTGCAATTGAGGAGGTTAGGGAGAGGGTGTATAGAGAGAGGGGTGGTGATGCTGAAGATATTAGGTTTTCTTTTTGGATCAATTTCCCACCTGGTTTTAAGATTGGCAAGTATTTCAAGATTGCAATGTGGAAGTGGCAGAGGGTTCCTTATTGGTCCCCTTATGAAGATGTTTCTGGGTATGATTTGAGGTCCATTGAGGCTCAGAAGAGAATGGAGAAGAGGGCTGTTGCCACTATCCATGAAATATTGTCATTGACTGTGGAGAAGAAGATAACTTTGGAAAGGATCGCGCACTTTCGGATGGCCATGAACCTGCCCAAGAAGTTGAAGGAGTTCCTGCTCCAGCATCAGGGTATTTTTTATGTCTCCACCAGGGGGAATCAGGGTAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATCGGAGAGGCGAGCTGATTGAGCCCAATGACTTGTATTTGGCACGGCGGGTGCTGGCTGAGCTGGTGTTGTTGAGCCCCCGGAAAGCTAAGGTTGATAGGGAGTTGGTTGGGTACAGGCGGCGTGGGTTAGATGATGAAATGGGGCAAGTAACAAGAGCATACGTGGAGGATGCTTGTGAAGACTTTAAGGGTGGAGATGATGTTGGGGAAGACAAGGATGCAGAGGATGATTTTACATCAGATGTAGGTTCTGATGTTGATTCTGGAGATTAG 1365 0.5004 MRFFGSISTNFFKRKLENFPLIHHFINHNPSFNLKFVREKSQSTAIPKKQLRIRDHGYDNYMEVEKKTRKVLKFQNLILNEPSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKLVMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIEEVRERVYRERGGDAEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPNDLYLARRVLAELVLLSPRKAKVDRELVGYRRRGLDDEMGQVTRAYVEDACEDFKGGDDVGEDKDAEDDFTSDVGSDVDSGD* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2574 454 PANTHER PROTEIN ROOT PRIMORDIUM DEFECTIVE 1 28 445 IPR040295 -
Lja2g2574 454 Pfam Plant organelle RNA recognition domain 54 389 IPR021099 GO:0003723
Lja2g2574 454 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 28 445 IPR045040 GO:0003723
Lja2g2574 454 MobiDBLite consensus disorder prediction 426 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2574 Lja-Chr2 34721051 34723275 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2574 - - gmx:100782167 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2574 2 34721051 34723275 Lja2g2574 2 34721051 34723275 ECH