Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2543 ATGTGTCATCCAAGTTCTCAAGATGTCACCTGCAAATGCAATTCAAGTCCTGATTCTCCAATCCCAATCAAGAAAACAGAGCAACCAAATTCTATTTCCAATGTGCTCACCAACCCGTTAATCTCCAAACCCACCACAACCAAAAACAACAAAAGTAAAACCCACCATGATTTCCCAGAAGCCTTCAAGGAAGTGGTTTCCATTTCCAAGATCGCCTTCCCAATGATCCTCACCGGCCTCCTCCTCTACTGCCGCTCCATGATCTCCATGCTCTTCCTCGGCCGCTTTGGGGACCTGGCCTTAGCCGGAGGCTCTCTCGCCGTCGGCTTCGCCAACATCACCGGCTACTCCATCCTCTCCGGCCTCGCCGTCGGAATGGAACCCATTTGTGGCCAGGCCTTTGGTGCCAAAAAGTTCACCACTCTTGGCCTCTGCCTACAAAGAACCATTCTTCTACTCCTCTTTACCTCTATCCCCATTTCACTTCTCTGGCTTTACATGAAGCAAATTCTTCTGTTTTGTAACCAGGATGAAGCCATAGCCACACAAGCACAATCATATCTTCTATACTCCATTCCTGACCTCATAGCTCAATCCTTTCTCCACCCATTACGAATTTACCTCAGAACTCAATCCATTACACTGCCTCTCACTCTCTGTGCCACACTTTCCATAATTCTGCACATACCCATCAATTTTTTCCTTGTTTCTCACCTCAATTTAGGAATCAAGGGTGTTGCGCTTAGTGGGGTGTGGACAAATTTCAACCTTGTTGCTTCTTTGATCATCTACATCGTTTTCTCTGGCACACACAAGAAAACATGGGGTGGTTTCTCCTTTGAATGCTTCACAAATTGGAAAATCCTCCTCAATTTGGCAATTCCAAGCTGCATTTCGGTTTGCCTAGAATGGTGGTGGTATGAGATCATGATTTTGCTATGCGGGTTGCTTATAAACCCGAAAGCCACGGTCGCGTCCATGGGAATCTTGATTCAAACCACTTCCCTGCTCTACATTTTCCCTTCTTCCCTCAGCTTCAGCGTGTCGACTCGAGTCGGGAACAAGCTCGGGGCGCAGAAGCCGGCGAAGGGGAGGCTCTCTGCAATTGTAGGCCTCTCTTGCAGCTTCCTATCTGGTTTTTTAGCTCTCATTTTTGCTCTCATGGTGAGAAACATTTGGGCCAGCATGTTCACACAGGACAAAGAGATCATAGCATTAACATCAATGGTGTTACCTATTATTGGGCTATGTGAGCTTGGAAACTGTCCTCAGACAACAGGGTGTGGTGTGTTGAGAGGAACTGCAAGGCCTAAAGATGGTGCTAATATCAATTTGGGGTGTTTCTACCTTGTGGGAATGCCTGTGTCTATTTGGTTAGCTTTCTTTGCTGGGTATGATTTTCAAGGGCTTTGGCTTGGGCTTCTTGCTGCTCAGGGTTCTTGTGCAGTGACCATGTTGGTTGTTCTTGTTAGGACAGATTGGGAATTTGAGGCTGAGAGAGCAATGAAATTAACAGGATCAAGTGTTGGTGTTGATGAAGAGAAGCCACTCAAAACTGAAATAAAGGAAGATTCTTTGTTATTAGCTGATTCAGATGAAGATGAACATTGCTGTATTTAA 1620 0.4586 MCHPSSQDVTCKCNSSPDSPIPIKKTEQPNSISNVLTNPLISKPTTTKNNKSKTHHDFPEAFKEVVSISKIAFPMILTGLLLYCRSMISMLFLGRFGDLALAGGSLAVGFANITGYSILSGLAVGMEPICGQAFGAKKFTTLGLCLQRTILLLLFTSIPISLLWLYMKQILLFCNQDEAIATQAQSYLLYSIPDLIAQSFLHPLRIYLRTQSITLPLTLCATLSIILHIPINFFLVSHLNLGIKGVALSGVWTNFNLVASLIIYIVFSGTHKKTWGGFSFECFTNWKILLNLAIPSCISVCLEWWWYEIMILLCGLLINPKATVASMGILIQTTSLLYIFPSSLSFSVSTRVGNKLGAQKPAKGRLSAIVGLSCSFLSGFLALIFALMVRNIWASMFTQDKEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKDGANINLGCFYLVGMPVSIWLAFFAGYDFQGLWLGLLAAQGSCAVTMLVVLVRTDWEFEAERAMKLTGSSVGVDEEKPLKTEIKEDSLLLADSDEDEHCCI* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2543 539 PANTHER MULTIDRUG RESISTANCE PROTEIN 49 515 - -
Lja2g2543 539 Pfam MatE 295 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2543 539 Pfam MatE 74 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2543 539 MobiDBLite consensus disorder prediction 1 28 - -
Lja2g2543 539 CDD MATE_eukaryotic 64 500 IPR045069 GO:0042910|GO:1990961
Lja2g2543 539 MobiDBLite consensus disorder prediction 36 55 - -
Lja2g2543 539 TIGRFAM matE: MATE efflux family protein 74 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2543 539 PANTHER PROTEIN DETOXIFICATION 49 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2543 Lja-Chr2 33612429 33614408 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2543 K03327 - gmx:100788027 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2543 2 33612429 33614408 Lja2g2543 2 33612429 33614408 ECH