Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2467 ATGAAAGCCTATTGTTGCCCACTCCCCATTCATCCAAACCCACCTCACAAAACCTCCCTCTTCACTCCAATGGCTTCCATTCCCACCTTCTCTTCTCTCACCACAATCTCTCCCCATTCAAACCCCAACCACCACCACCACTCTTGCACACTCCCTCTCACCTCTCTCTTCGGAACCAGAATCACCCTCCACCGCCCCGCCTCCTCTCGTTCCCTTCATCTCAACACCAATTGCCGCGCAACCTCAGCAACGGTGTCGTTTAGCCTCCCCACCCCGAAACCTCAACCGGATGCACCTGAGAAAGTTCCAAAGTGGTCGGCGAGGTCGATAAAGTCGTTTGCAATGGGGGAATTGGAAGCGAGGAAGCTCAAGTATCCTACCACAGGAACTGAGGCACTTCTCATGGGGATTTTAGTTGAAGGAACAAGTAAAGCTGCAAAATTCTTAAGAGCCAATGGAATTACTCTTTTCAAAGTACGTGATGAAACGGTAGAGCTACTTGGGAAATCTGACATGTATTTCTTCAGTCCAGAACATCCTCCTTTGACTGAACCCGCTCGGAAAGCCCTTGATTGGGCAATTGATGAGAAATTAAAGTCAGGTGGAGAAGGGGAAATAAACGTGGCTCATTTACTTCTAGGAATTTGGTCACAAAAAGAATCAGCAGGTCAACAGATCTTGGCCGGTCTAGGTTTCAATGATGAAAAAGCCAAAGAACTTGCAAAATCAGTTGATGGAGATATTGACTTGAGTTACAGGAGAACAGCATAG 771 0.4747 MKAYCCPLPIHPNPPHKTSLFTPMASIPTFSSLTTISPHSNPNHHHHSCTLPLTSLFGTRITLHRPASSRSLHLNTNCRATSATVSFSLPTPKPQPDAPEKVPKWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDETVELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAGLGFNDEKAKELAKSVDGDIDLSYRRTA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2467 256 Pfam Clp amino terminal domain, pathogenicity island component 204 242 IPR004176 -
Lja2g2467 256 Pfam Clp amino terminal domain, pathogenicity island component 119 168 IPR004176 -
Lja2g2467 256 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 28 253 - -
Lja2g2467 256 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 28 253 IPR044217 -
Lja2g2467 256 SUPERFAMILY Double Clp-N motif 104 246 IPR036628 -
Lja2g2467 256 Gene3D - 104 249 IPR036628 -
Lja2g2467 256 ProSiteProfiles Clp repeat (R) domain profile. 99 247 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2467 Lja-Chr2 31150198 31154337 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2467 - - gmx:100802336 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2467 2 31150198 31154337 Lja2g2467 2 31150198 31154337 ECH