Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2466 ATGAGTTTCGCGGCGTACAAGATGATGCAGTGGCCCACCGGCGTCGAACACTGCGCCTCCGGCTTCCTCACCCATTCCCGCGCCGACCTCGCTTCCCACACCATCATTCCTCCCCCCGACGACGACCTCGATTCCGACTGGGCCCCACGTCCCCGCCACCCCTCCCCTCTCCCCAACCTCGTCGTCACTGCCGCTAACGTCCTCGAAGTCTACATCGTCCGCCTCCAGGACCGCCATCCTTCAAAGCCCTCCTCCGCCCGCGGTACACTCCTCGATGGAATCTCCGGCGCCTCGCTTGAGCTCGTTTGCCATTACAGGTTGCATGGAAATGTTAAAAGCATGGCTGTCTTGAGCATTGGGGGTGGTGATACTTCTAAAAGGAGAGATTCTATCATCTTAACTTTTAAAGATGCGAAGATTTCAGTTCTAGAGTATGATGATTCTATTCATGGACTCCGAACTAGTTCTTTGCATTGCTTTGAGGGTCCAGAATGGCTCCATTTAAAAAGAGGCAGGGAACAATTTGCAAGAGGTCCAGTGGTAAAGGTTGATCCTCAAGGAAGGTGTGGTGGAGTTCTAGTCTACGATTTGCAAATGATAATACTAAAGACTACTCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGATCCGTTGGGTTCTGGAGGTGCAGTTGCTGCTCGCATTGACTCATCTTATATGATAAATCTGCGTGACTTGGATATGAGGCATGTAAAAGATTTTACATTTGTTCATGGCTATATTGAACCTGTGATGGTGATCTTGCACGAACGTGAGCTTAGCTGGGCTGGGCGTGTCGCATGGAAGCATCATACTTGCATGATATCAGCGCTTAGTATCAGCACAACTTTGAAGCAACATCCACTTATTTGGTCAGCTGTTAATCTGCCTCACGATGCTTACAAGCTTATTGCAGTGCCCTCTCCAATTGGTGGTGTTCTTGTAATTGCTGCTAATACTATTCATTATCACAGTCAGTCTGCTTCTTGTGCACTGGCCTTGAACAGCTATGCGGTTTCACTTGATAGTAGTCAGGAGATGCCAAGATCATTTTTCAACGTAGAACTTGATGCTGCCAATGCTACTTGGTTGTCGAATGATGTGGCCTTATTGTCAACAAAAACTGGTGAATTGCTATTGCTTACTCTTATTTTTGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACGACAATCGGAAATTCTCTGTTTTTTCTCGCCAGTCGATTAGGAGACAGTATGCTAGTGCAATTTTCTTGTGGATCAAGTGTTTCAATGTTGTCTTCCAATCTAAAAGAAGAGGTCGGTGATATTGAAGGAGATGCTTCTTCAACAAAGAGATTGCGGAGGTCACCTTCTGATTCTTTACATGATATGGTTAGTGGTGAGGAACTCTCCTTGTATGGATCTGCTCCAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTAAGGGATTCATTGATTAACATTGGTCCTTTGAAAGATTTCTCATACGGTTTGAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAGCAGAGTAACTATGAATTGGTCTGCTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTCTTCGGCAATCAATTCGCCCAGAAGTTATTACTGAGGTTGAACTTCCTGGGTGCAAAGGAATTTGGACTGTTTATCATAAGAGCGCACGCTCTCATATTTCCGATTCTTCTAAGCTGGCCGATGATGATGATGAGTATCATGCATACCTTATTATAAGTTTGGAGGCTCGTACTATGGTACTAGAAACAGCCGATCTGCTAAGTGAGGTTACTGAAAGTGTTGACTATTATGTTCAAGGAAAAACACTTGCGGCAGGGAATTTATTCGGAAGGCGTCGAGTTATTCAAGTGTATGAACGTGGTGCTCGGATCCTAGATGGTTCTTTTATGACCCAAGATATAAGCTTTGGGCCTTCTAACTCTGATTCTAATTCGGGATCTGAGAGTGCTTTAGCACTCTCGGTGTCTATAGCTGATCCATATGTCTTACTCAGAATGAGTGATGGAAGTATTCGACTTTTGGTTGGAGATCCTAGTACATGCACCATTTCTGTCACTTCTCCAGCTTCATTTGAGAGCTCTAAGGAATCAGTTTCTTCATGTACACTGTATCATGATAAAGGACCTGAGCCATGGCTAAGGAAGACAAGCACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGCACTGATGGTGCACCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTATGAAAATGGAAACCTTGAAATATTTGATGTGCCCAATTTTAGTTGTGTTTTTTCTGTTGAGAATTTTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGACGAAAGAGGTGGCCAAAGATTCTCAAAAGGGGGATAAAGGTTCTGATGCAGTGGCCAACCAAGGCAGGAAGGAAAATGTACTGAATATGAAGGTTGTAGAGTTAGCCATGCAGAGATGGTCAGGGCAGCACAGCCGCCCATTTCTTTTTGGTATTTTGAGTGATGGAACAATACTTTGTTACCATGCTTACCTTTATGAAAGCCCTGATGGTACTTCTAAAGTTGAGGACTCAGTTTCAGCCAGTGGACCTGTTGACCTTAGCAGCACTAGTGTTTCTAGGCTTAGAAATTTGAGATTTGTTCGTTTGCCATTGGATGCATATCCCAGGGAGGAGACATCAAATGGATCACCTGGTCAACATATTACTATTTTCAAGAATATTGGTAGTTATGAAGGGTTCTTCCTATCAGGGTCAAGACCGGCTTGGGTTATGGTATTGAGAGAGCGACTCCGTGTTCATCCGCAGTTATGTGACGGGTCCATTCTTGCTTTTACTGTCCTACACAACGTGAACTGCAATCACGGACTCATATATGTTACATCACAGGGTGTTCTAAAGATATGCCAATTACCTACTGGCTCAAACTACGACAGCCACTGGCCTGTACAGAAAGTTCCATTGAAAGCCACACCTCATCAAGTAACTTACTTTGCAGAGAAGAATTTGTATCCGCTTATTGTTTCATTTCCTGTTCTTAAGCCACTAAGTCAAGTTGTTTCTCTGGTTGACCCAGATGCCAACCATCAGACTGAGAATCCGAATTTGAACTCTGATGAACAAAACCGCTTTTATACTGTTGATGAATTTGAGGTTCGTATCATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACTAAGGCAACCATACCTATGCAGAGTTCTGAAAATGCCCTCACTGTGAAGATGGTTACTCTGGTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCGTTGGTACTGCTTATGTGCAAGGCGAGGATGTTGCTGCGAGAGGTCGAATCCTCTTGTTTTCCTTGGGCAAAAATACTGATAATCCACAAAATCTGGTTTCAGAGGTTTACTCGAAGGAATCAAAAGGTGATGTGTCTGCATTGGCCTCACTTCAGGGCCATCTATTAATAGCATCTGGTCCAAAAATTACTCTGCATAAGTGGACTGGCACTGAGTTGACTGGTATTGCATTTTTTGATGCACCACCATTACATGTTGTGAGCTTAAATATTGTAAAGAACTTCATTCTTATCGGTGATGTCCATAAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAACTTAACTTGTTAGCTAAGGATTTTGGCTCTCTTAATTGTTTTGCGACAGAATTTTTGATTGATGGAAGTACTCTGAGTCTCATGGTTTCAGATGATCAAAAAAATATCCAGATTTTTTACTATGCTCCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGGGCTGAATTTCATGTTGGTGCACATGTGACTAAATTCTTAAGGTTGCAGATGCTATCCACTTCTGACCGAACTGGTGCAGGTCCAGGCTCAGATAAAACCAATCGATTTGCCTTATTATTTGGTACCTTGGATGGCAGTATTGGTTGCATTGCTCCTCTTGATGAAATCACGTTTCGTAGACTGCAATCTTTGCAGAGGAAGCTTGTAGATGCTGTACCGCATGTTGCTGGCTTGAATCCAAGAGCTTTCAGGCAGTTCAATTCAAATGGAAAGGCCCATCGGCCTGGCCCTGACAGTATAGTTGACTGCGAGCTTCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCTAATTGGGACGACTCGATCACAAATTCTCACAAATCTAAGCGATCTGTCCCTTGGAACAAGCTTCTTGTGA 4359 0.4357 MSFAAYKMMQWPTGVEHCASGFLTHSRADLASHTIIPPPDDDLDSDWAPRPRHPSPLPNLVVTAANVLEVYIVRLQDRHPSKPSSARGTLLDGISGASLELVCHYRLHGNVKSMAVLSIGGGDTSKRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDPLGSGGAVAARIDSSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELSWAGRVAWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLIAVPSPIGGVLVIAANTIHYHSQSASCALALNSYAVSLDSSQEMPRSFFNVELDAANATWLSNDVALLSTKTGELLLLTLIFDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSSVSMLSSNLKEEVGDIEGDASSTKRLRRSPSDSLHDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINIGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSARSHISDSSKLADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDISFGPSNSDSNSGSESALALSVSIADPYVLLRMSDGSIRLLVGDPSTCTISVTSPASFESSKESVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAPQDHGDIYCVVCYENGNLEIFDVPNFSCVFSVENFMSGKSHLVDALTKEVAKDSQKGDKGSDAVANQGRKENVLNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVSASGPVDLSSTSVSRLRNLRFVRLPLDAYPREETSNGSPGQHITIFKNIGSYEGFFLSGSRPAWVMVLRERLRVHPQLCDGSILAFTVLHNVNCNHGLIYVTSQGVLKICQLPTGSNYDSHWPVQKVPLKATPHQVTYFAEKNLYPLIVSFPVLKPLSQVVSLVDPDANHQTENPNLNSDEQNRFYTVDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTAYVQGEDVAARGRILLFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHKWTGTELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLNLLAKDFGSLNCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHLIGTTRSQILTNLSDLSLGTSFL* 1453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2466 1452 Pfam CPSF A subunit region 1085 1417 IPR004871 GO:0003676|GO:0005634
Lja2g2466 1452 SUPERFAMILY WD40 repeat-like 777 1290 IPR036322 GO:0005515
Lja2g2466 1452 Gene3D - 974 1359 IPR015943 GO:0005515
Lja2g2466 1452 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1443 - -
Lja2g2466 1452 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1443 - -
Lja2g2466 1452 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 129 690 IPR018846 -
Lja2g2466 1452 Gene3D - 55 447 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2466 Lja-Chr2 31124534 31146886 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2466 K14401 - gmx:100785543 2579.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2466 2 31124534 31146886 Lja2g2466 2 31124534 31146886 ECH