Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2445 ATGTACAGAAGAGCAAAGATTGCTTTCGATGGTTTTCGAAGCTTGACTTTCAGGGTTGCTCCTCAAAATCCATCTTTTCGATGTAACTCGAGGATTTGGCCATCTGGGTATTCGAATTCATGCTCAAAAGGAGCTAGCTCTAATGGGTTCTCTTCGTTTTCTTCAATTTCTCAGAGATTAAGCACAAGAGGTGTTGGTGTTAATGGGGTTAATGGGGTTAACAGGAACTTTAACAATCTGTTTCTTTCTGGGGGTAGGAGATTTTACTATGTGGATCCTTACAATGTGAAGCATTTCAAGCCAAGAGGGCCAAGGCGATGGTTTCAGAATCCTAGACATGTTTTCATTGTTGTGGTGGTTGGTTCAGGTGTTTTCATCACTTTGTATTTTGGGAATAGGGAAACAGTTCCTTACACGAACCGAACTCATTGGATTCTGATGTCTAGACCCATGGAGAGGAGGCTAGGGGAGTCTGAGTTTGAGAAGATGAAGGCAGGTTTTAAGGGGAAGATGTTGCCTCCTATACACCCGGAAAGTGTGAGGGTGAGGATGATAGCTCAGGATATCATTGGTGCATTGCAGAGAGGGTTGAGGAAGGAGAATGTGTGGAGTGATTTGGAGTATGCATCACAGAATACCATGTTGGGTGAAGAAAGTGGGAGGGAGGCATTGCATGTGCTGGCTGAAAATGAAGGGAAGATTGAAGGGAAGTGGCATAGGGAGGATGAGATTCTTGATGAGAAGTGGGTTCAGCAGAGTAGGAAAAAAGGTAAGGAACAAGGGAAAGAGCCTAACACTGCTCATTTGGATGGTTTGAATTGGGAGGTTTTGGTTGTGAATGAGCCTCTTGTTAATGCCTTCTGCTTGCCTGGTGGGAAGATAGTTGTATTTACTGGTTTGCTTGAGCATTTTAGAAGTGATGCAGAGATAGCAACTATTATTGGACATGAGGTTGGACATGCTGTGGCTCGACACAGTGCTGAGGGGATTACAAAGAATCTGTGGTTTTTTATTCTGCAGTTGATTCTTTATCAAATTGGCGTTATGCCTGATCTTGTCAACACAATGTCATCGCTTTTATTACGGCTACCTTTCTCGAGACGGATGGAAATGGAAGCCGACTACATTGGGCTACTGTTAATTGCATCAGCTGGCTATGATCCCCGGGTGGCACCTAAAGTCTATGAGAAATTGGGAAGAGTCACTGGCGATTCTACGCTTGGAAATTATATCTCTACTCATCCATCTGGAAAAAAGAGAGCAGAATTGCTGGCACAAGCTAAGATAATGGAAGAAGCACTTACTATATATAAGAATGTTAGGTCAGGACGTGGGGTTGAAGGATTTCTTTAG 1353 0.4339 MYRRAKIAFDGFRSLTFRVAPQNPSFRCNSRIWPSGYSNSCSKGASSNGFSSFSSISQRLSTRGVGVNGVNGVNRNFNNLFLSGGRRFYYVDPYNVKHFKPRGPRRWFQNPRHVFIVVVVGSGVFITLYFGNRETVPYTNRTHWILMSRPMERRLGESEFEKMKAGFKGKMLPPIHPESVRVRMIAQDIIGALQRGLRKENVWSDLEYASQNTMLGEESGREALHVLAENEGKIEGKWHREDEILDEKWVQQSRKKGKEQGKEPNTAHLDGLNWEVLVVNEPLVNAFCLPGGKIVVFTGLLEHFRSDAEIATIIGHEVGHAVARHSAEGITKNLWFFILQLILYQIGVMPDLVNTMSSLLLRLPFSRRMEMEADYIGLLLIASAGYDPRVAPKVYEKLGRVTGDSTLGNYISTHPSGKKRAELLAQAKIMEEALTIYKNVRSGRGVEGFL* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2445 450 PANTHER METALLOENDOPEPTIDASE OMA1 86 442 - -
Lja2g2445 450 CDD M48C_Oma1_like 250 433 - -
Lja2g2445 450 Pfam Peptidase family M48 268 425 IPR001915 GO:0004222|GO:0006508
Lja2g2445 450 Gene3D Metalloproteases ("zincins"), catalytic domain 263 329 - -
Lja2g2445 450 PANTHER METALLOENDOPEPTIDASE OMA1, MITOCHONDRIAL 86 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2445 Lja-Chr2 30547900 30551229 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2445 K23010 - gmx:100799127 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2445 2 30547900 30551229 Lja2g2445 2 30547900 30551229 ECH