Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2417 ATGGCCTCTTCTTCACACCCCAACAATGTGGGAATCCTTGCCATTGACATCTACTTCCCACCCACCTGCGTGCAGCAGGGGGCTTTGGAGGAACATGATGGCGTGAGCAAAGGGAAATACACTATTGGGCTTGGTCAAGATTGCATGGCATTCTGCACTGATGTTGAAGATGTTATCTCAATGAGTTTGACGGTTGTTACTTCACTTCTTGAAAAGTATAATGTTGATTCAAAGCAAATTGGACGCTTGGAGGTTGGAAGTGAAACTGTCATTGATAAAAGCAAATCCATTAAGACCTTCCTTATGCAAGTTTTTGAGGAGAGTGGTAATGCTGACATTGAAGGTGTTGATTCAACAAACGCATGCTATGGTGGAACAGCAGCTTTGTTCAATTGCGTGAATTGGGTTGAGAGTAGTTCATGGGATGGACGCTATGGACTTGTTGTATGTACAGACAGTGCGGTATATGCTGAGGGACCTGCTCGTCCAACTGGAGGAGCCGCTGCAATTGCCATGCTCATAGGGCCAGATGCTCCTATTGTATTTGAAAGCAAACTCAGGGGCAGTCACATGTCTCATGTCTATGATTTTTACAAGCCAAATCTTGCAAGTGAATACCCAGTTGTTGATGGAATGCTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGCTATCGGCTTTTATGTGAGAAATTTGAAAAATTGGAGGGGAGGCCGTTTTCAATATCAGATTCTGATTATTTTGTTTTTCATTCTCCATATAACAAGCTTGTGCAGAAAAGTTTTGGTCGGTTATACTTCAACGACTTCCAGAGAAATCCCAGTTTTGTTGATGAAGTTTCCAGGAATGCCCTAGCGCCTTTTGCATCCTTATCTGGTGATGAGAGCTATCGCAGTCGTGATCTTGAAAAGGCAAATCAGCAAGCTGCAAAGCATGTTTATGACGCGAAGGTGCAGCCTGGCACACTAATCCCAAAGCAAGTTGGCAACATGTACACTGCATCACTTTATTCAGCATTTGCATCTCTCCTTCACAATAAGCATGACTCGCTGGTAGGTAAACGTGTAGTTATGTTCTCTTATGGGAGTGGTTTAACCGCTACAATGTTCTCCTTCCGCCTTCAAGAAGGCCAGCAACCCTTTAATTTGTCAAACATTGTAAAGTTGATGAATGTTTCTGACAAATTGAAGCAGAGAATTGAGGTTACTCCTGAAAAGTTTGTTGAAACTTTGAAAATCATGGAGCAGCGTTATGGGGCAAAGGACTTTGTGACTAGCATGGACTGTAGCTACCTACATCCAGGCACATTCTATCTCACCAAAGTTGATTCCATGTATAGAAGATTTTATTCCAAGAAGGACACCATGAGCAGATGA 1380 0.429 MASSSHPNNVGILAIDIYFPPTCVQQGALEEHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVTSLLEKYNVDSKQIGRLEVGSETVIDKSKSIKTFLMQVFEESGNADIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLRGSHMSHVYDFYKPNLASEYPVVDGMLSQTCYLMALDSCYRLLCEKFEKLEGRPFSISDSDYFVFHSPYNKLVQKSFGRLYFNDFQRNPSFVDEVSRNALAPFASLSGDESYRSRDLEKANQQAAKHVYDAKVQPGTLIPKQVGNMYTASLYSAFASLLHNKHDSLVGKRVVMFSYGSGLTATMFSFRLQEGQQPFNLSNIVKLMNVSDKLKQRIEVTPEKFVETLKIMEQRYGAKDFVTSMDCSYLHPGTFYLTKVDSMYRRFYSKKDTMSR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2417 459 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 7 454 IPR010122 GO:0004421|GO:0008299
Lja2g2417 459 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 180 454 IPR013746 GO:0004421|GO:0006084|GO:0010142
Lja2g2417 459 SUPERFAMILY Thiolase-like 180 452 IPR016039 GO:0016746
Lja2g2417 459 Gene3D - 3 455 IPR016039 GO:0016746
Lja2g2417 459 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 7 179 IPR013528 -
Lja2g2417 459 SUPERFAMILY Thiolase-like 9 177 IPR016039 GO:0016746
Lja2g2417 459 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 110 125 IPR000590 GO:0004421|GO:0008299
Lja2g2417 459 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 5 454 - -
Lja2g2417 459 CDD init_cond_enzymes 9 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2417 Lja-Chr2 29855218 29861227 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2417 K01641 - gmx:100777679 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2417 2 29855218 29861227 Lja2g2417 2 29855218 29861227 ECH