Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2181 ATGGCTGCTGATGCATTTGATGAGCAGTGTGATTACCTGTTCAAGGCTGTTCTGATTGGAGACTCTGGAGTTGGGAAATCAAATCTGATCTCAAGGTTTGCAAAAGATGAGTTCCGTTTGGATTCAAAGCCCACGATAGGTGTCGAATTCGCTTACCGGAACATTAAAGTCAGAGATAAGCTCATCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCTATCACAAGCTCATACTACAGAGGAGCCTTGGGGGCAATGCTAGTGTATGACATAACCAGGCGACCAACATTTATGAATGTGATAAAATGGTTACATGAGCTGAGAGAGTTCGGAAATGAGGACATGGTGGTTGTTCTGGTGGCGAACAAATCTGATTTGGTTCAATCAAGGGAAGTTGAGAAGGAAGAGGGAGAAGAGTTTGCAGAAATAGAAGGGTTGTGTTTTATGGAAACCTCTGCTTTGCAGAATTTGAATGTTGAGGAAGCATTCTTAGAAATGATCACTAAGATCCATGACATCATAAGCCAGAAAAGCTTGGAAGCCAAAATGAATGGGCCAACAACATTAAGTGTTCCAATTGGAAAGGAGATTCAAGTAGCTGATGAAGTGACTGCTACTAAACAAGCTAATTGTTGTTCAAGATGA 657 0.4201 MAADAFDEQCDYLFKAVLIGDSGVGKSNLISRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRRPTFMNVIKWLHELREFGNEDMVVVLVANKSDLVQSREVEKEEGEEFAEIEGLCFMETSALQNLNVEEAFLEMITKIHDIISQKSLEAKMNGPTTLSVPIGKEIQVADEVTATKQANCCSR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2181 218 ProSiteProfiles small GTPase Ras family profile. 8 218 IPR001806 GO:0003924|GO:0005525
Lja2g2181 218 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Lja2g2181 218 PRINTS Transforming protein P21 ras signature 37 53 - -
Lja2g2181 218 PRINTS Transforming protein P21 ras signature 55 77 - -
Lja2g2181 218 PRINTS Transforming protein P21 ras signature 152 174 - -
Lja2g2181 218 PRINTS Transforming protein P21 ras signature 14 35 - -
Lja2g2181 218 PRINTS Transforming protein P21 ras signature 117 130 - -
Lja2g2181 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 187 IPR027417 -
Lja2g2181 218 Gene3D - 6 216 IPR027417 -
Lja2g2181 218 SMART rab_sub_5 14 177 - -
Lja2g2181 218 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Lja2g2181 218 TIGRFAM small_GTP: small GTP-binding protein domain 13 167 IPR005225 GO:0005525
Lja2g2181 218 SMART rho_sub_3 16 177 IPR001806 GO:0003924|GO:0005525
Lja2g2181 218 SMART ras_sub_4 11 177 - -
Lja2g2181 218 ProSiteProfiles small GTPase Rab1 family profile. 9 216 - -
Lja2g2181 218 PANTHER DRAB5-RELATED 3 217 - -
Lja2g2181 218 SMART ran_sub_2 19 217 - -
Lja2g2181 218 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 3 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2181 Lja-Chr2 24820932 24826429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2181 15 167 EF-hand Containing Proteins AT5G27540 28.916 4.73e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2181 K07976 - gmx:100815793 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2181 2 24820932 24826429 Lja2g2181 2 24820932 24826429 ECH