Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2171 ATGGCTGAACACCAACAATGGTTGTGTGTTTTCTTCTTCTTCTTCTTCCTCTCCTTGCATGTTGATGGGACTGTGGAGACTGAAGCGATGCGTTTAGACACTGGAGGGTTGAGTAGAGAGGCGTTCCCCAAAGGGTTCTTGTTCGGAACGGCAACTTCAGCTTACCAAGTTGAGGGTATGGCAGATAAAGAAGGACGTGGCCCTAGCATTTGGGACGTTTTCATCAAAAAACCTGGGATTGTGGCAAATAATGGTACCGGAGAAGTTTCAGTTGATCAGTATCATCGCTACAAAGAAGACATAGATATCATGGCAAATCTAAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGAATTTTTCCAAATGGAACAGGCAAAGTAAATTGGAAAGGTGTGGCATACTACAATAGGTTGATCAATTACTTACTAGAACGAGGAATTACTCCTTATGCAAATCTCTACCACTATGATCTTCCTTTAGCTCTTGAGTTGAGATACAATGGACTATTGAGCCGCCAAGTTGTGAAAGATTTTGCGGATTATGCAGAATTCTGTTTCAAGACATTTGGAGACAGAGTGAAAAACTGGATGACTTTTAATGAACCTAGGGTGGTGTCTGCTCTTGGCTATGATAATGGGTTCTTCGCCCCTGGAAGGTGCTCAAAAGAATATGGGAATTGTACAGCTGGAAATTCAGGCACTGAACCTTACATTGTAACCCACAATTTGCTATTGTCACATGCTGCTGCTGTTCAAAGATACAGAGAAAAGTACCAAGAAAAACAAAAGGGAAGGATTGGGATTCTCCTGGATTTTGTTTGGTATGAGCCTCTTACGCGATCAAAGGCTGACAACAATGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATGGTTCATGCATCCCCTTGTGTATGGAGAATATCCAAAAACTATTCAAAACATTGTTGGTAATAGACTCCCCAAGTTCACTAAGGAGGAAGTTAAAATTGTGAAGGGCTCGTTTGATTTTATTGGTATCAACCAATACACTACTTACTACATGTATGATCCCCATCAATCAAAACCTAAGGTGCCAGGCTACCAACAAGAGTGGAATGCAGGGTTTGCTTATGCAAAGAATGGAGTGCCTATTGGTCCACAAGCATATTCATATTGGCTGTACAACGTTCCATGGGGCATGTACAAAGCTTTAATGTACATCAAGGAGCGCTATGGGAACCCAACTGTGATCTTATCAGAAAATGGCATGGATGACCCGGGTAATATTACATTTACCAAAGCTTTGCATGACACCACAAGAATAAACTATTACAAAACATATTTGACTCAACTAAAGAAAGCAAGGGATGATGGAGCAAATGTGGTTGGATATTTTGCATGGTCATTGCTGGATAACTTCGAGTGGAGATTGGGGTACACATCAAGGTTTGGCATTGTGTATGTTGATTTCAAGACCCTTAAGAGAACCCCCAAGATGTCAGCTTTTTGGTTCAAGAAGCTACTTACCAAGAAGCAGTAA 1527 0.4152 MAEHQQWLCVFFFFFFLSLHVDGTVETEAMRLDTGGLSREAFPKGFLFGTATSAYQVEGMADKEGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDIMANLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYNRLINYLLERGITPYANLYHYDLPLALELRYNGLLSRQVVKDFADYAEFCFKTFGDRVKNWMTFNEPRVVSALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYIVTHNLLLSHAAAVQRYREKYQEKQKGRIGILLDFVWYEPLTRSKADNNAAQRARDFHVGWFMHPLVYGEYPKTIQNIVGNRLPKFTKEEVKIVKGSFDFIGINQYTTYYMYDPHQSKPKVPGYQQEWNAGFAYAKNGVPIGPQAYSYWLYNVPWGMYKALMYIKERYGNPTVILSENGMDDPGNITFTKALHDTTRINYYKTYLTQLKKARDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKMSAFWFKKLLTKKQ* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2171 508 SUPERFAMILY (Trans)glycosidases 35 505 IPR017853 -
Lja2g2171 508 PANTHER BETA-GLUCOSIDASE 44 25 505 - -
Lja2g2171 508 Pfam Glycosyl hydrolase family 1 39 507 IPR001360 GO:0004553|GO:0005975
Lja2g2171 508 Gene3D Glycosidases 23 508 - -
Lja2g2171 508 PRINTS Glycosyl hydrolase family 1 signature 412 420 IPR001360 GO:0004553|GO:0005975
Lja2g2171 508 PRINTS Glycosyl hydrolase family 1 signature 454 471 IPR001360 GO:0004553|GO:0005975
Lja2g2171 508 PRINTS Glycosyl hydrolase family 1 signature 478 490 IPR001360 GO:0004553|GO:0005975
Lja2g2171 508 PRINTS Glycosyl hydrolase family 1 signature 433 444 IPR001360 GO:0004553|GO:0005975
Lja2g2171 508 PRINTS Glycosyl hydrolase family 1 signature 336 350 IPR001360 GO:0004553|GO:0005975
Lja2g2171 508 PANTHER GLYCOSYL HYDROLASE 25 505 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2171 Lja-Chr2 24611169 24616099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2171 22 506 Glycoside Hydrolase AT3G18080 79.012 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2171 K05350 - gmx:100814740 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2171 2 24611169 24616099 Lja2g2171 2 24611169 24616099 ECH