Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2107 ATGACTTCTTCTTCTTCTTCTTTGGGCACGATCAACATCGCTGCAAGTGCTCAGAAACTCGATGTCGATAACCGAATCGCTCTCCGTTTCTACTTCCGGATCGCCGATAACATCCTCCGTCAGGCTGATATCTTTCGTGCGGAGAAGAATATTATTGACCTATATGTCATGCTTCTAAGATTTTCTAGTTTGGTGACTGAGACAATACCGCGTCACCGAGATTATAGATCATCTCCACAGAGCAGGAAAGAATCATTGAGAAAGAAATTGTTAATATCTTTGAGTGAACTGGAGAAGTTGAAACCACTGGTCCTACAGAAGATCAATGAGCTTAACAGCAGACATGTATACCAACAAAATGGGAGGGGGAAAATTCATTCAAATAATTCAGTAGCAGCTTTTTCACCTGTGAAAAAGCAAACTTTGGCTAGTTATGGCCAAATAAAGACAGTCAGACCAACGGCGAGGGAGTTTGTTTACCAAGGATCAGGTGGCCAACAGTACTCTTATGTCAGGCCTGTGGAGGAGCAAGTGCGAAGACTATCTCTAACTCTGCCTCCTCCAAAGGAAGAAACTCTCTCTAGACATTCTATCCTTGGTCCCAATGGGCTCAACGGGCAGTGGCGGCCACCTACTACTGATAAAGGGGTCAGGTATCCAACCAATATAGATCTGTCTCCAGTTGACATACCAAGAACACACAGCCTACAACATTCCTTGGAAGATGAATCTCTGAATAAAAAGGATAATAGCATTGCAGAACCCTATAAATCAGATTTAGATTCAATTCTTACCCAGAGTGAGGACAGCCAGCCCCAGCAAGCTCAGGAACCTCCTTCTCTTATCTCTTTTGAGGCGATAGAAACCCCTGCTCGAATAGAAGTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTGCAAGATTTGGTCCCTGCAGTGTCACCTCAAGTTAATGAGGCAGGATGTTTGACAGATATTCCATCATCTGATAGTTTTGTTCGTGCTGAGTCTCCTCTGCAATTGCACATTTCAACTGCTATGATGGACAGTTTTATGAAGCTTGCCAAGTCGAATACTAAGAAAAATTTAGAGACTTGTGGTATTCTTGCTGGCGTACTTAAAAACAGGAAATTTTATATTACTGCTCTGATAATCCCAAAACAGGAGTCTACATCAGATTCTTGTCAGGCTACAAATGAAGAAGAAATATTTGAAGTGCAGGATAAACGATCTCTTTTCCCCCTTGGGTGGATCCATACACATCCTACACAATCTTGTTTCATGTCATCGATTGATCTGCACACCCATTATTCATATCAGATTATGCTGCCAGAATCTGTTGCTATCGTCATGGCGCCCAAAGATAGTTCAAGAAACCATGGCATTTTTCGGTTGACAACACCTGGTGGAATGTCTGTGATCAAACAATGCGATCAACGCGGGTTTCATCCACATAATCAGCCTCCAGATGGTGGTCCTATCTACGATACCTGTACAGATGTTTACATGAACCCAGATTTAAAATTTGATGTCATTGACCTTAGGTGA 1554 0.426 MTSSSSSLGTINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETIPRHRDYRSSPQSRKESLRKKLLISLSELEKLKPLVLQKINELNSRHVYQQNGRGKIHSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSLTLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDESLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPPVLAEVQDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLAKSNTKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPKDSSRNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2107 517 PANTHER AMSH-LIKE PROTEASE 1 517 - -
Lja2g2107 517 SUPERFAMILY USP8 N-terminal domain-like 25 124 - -
Lja2g2107 517 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 517 - -
Lja2g2107 517 CDD MPN_AMSH_like 342 517 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lja2g2107 517 ProSiteProfiles MPN domain profile. 343 473 IPR037518 -
Lja2g2107 517 MobiDBLite consensus disorder prediction 185 229 - -
Lja2g2107 517 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 340 446 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lja2g2107 517 Gene3D - 2 130 - -
Lja2g2107 517 Pfam USP8 dimerisation domain 13 102 IPR015063 -
Lja2g2107 517 Gene3D Cytidine Deaminase, domain 2 330 517 - -
Lja2g2107 517 SUPERFAMILY JAB1/MPN domain 342 473 - -
Lja2g2107 517 SMART pad1_6 342 470 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2107 Lja-Chr2 23328560 23334995 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2107 K11866 - gmx:100804754 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2107 2 23328560 23334995 Lja2g2107 2 23328560 23334995 ECH