Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2082 ATGGCTTCTTTGACCACTTTCACCATTGTTCCTCTCTCTCAAATTGTTCTCTTGCTGCTGTTTTCTTACCCACCCAACACACTTCCTCAGGATCCAATCTCCTCAAGCCCCACCATGGCCCAATGCACATCAAGCCTCCTACCTCTCATTCCTTGTGCACAATTTGTGCAGGGCACTGCTCCCTCTCCAGGGCCTCAATGTTGTGCCAACCTCAAGCAACTCTACATCCAAGAGCCACTTTGCCTTTGCCTCTTTCTCAATGATACCACCTTCACCTCTTTCCCCATCAACAAGACACTTGCTCTGCAACTTCCATCTCTTTGCGCGCTTCGAGTTTTTATCTCTGCATGTCCAGGTTACATAAACAGGGAACAAGTGCAGGTGGCTCCAACTTCACCACATTCACAGTTTTCCTTTGGGACGAGGACCGACCCTACTATTGCTGCTTCTCCAGCATTTTCAGTGCCTCCAAGACCTAGAATGATGGGATTTGGGTTTGGAACAAGCAATGCCATTAACTTGAAGGCAAACAATGAATTAATTGTGTCTATCGCATTGTTGTTCACATTTGTGCTTTACTAG 582 0.4674 MASLTTFTIVPLSQIVLLLLFSYPPNTLPQDPISSSPTMAQCTSSLLPLIPCAQFVQGTAPSPGPQCCANLKQLYIQEPLCLCLFLNDTTFTSFPINKTLALQLPSLCALRVFISACPGYINREQVQVAPTSPHSQFSFGTRTDPTIAASPAFSVPPRPRMMGFGFGTSNAINLKANNELIVSIALLFTFVLY* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2082 193 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 41 118 IPR036312 -
Lja2g2082 193 Pfam Probable lipid transfer 35 115 IPR016140 -
Lja2g2082 193 Gene3D - 38 117 IPR036312 -
Lja2g2082 193 CDD AAI_LTSS 49 108 - -
Lja2g2082 193 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 19 135 IPR043325 -
Lja2g2082 193 SMART aai_6 42 117 IPR016140 -
Lja2g2082 193 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 19 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2082 Lja-Chr2 22987245 22988344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2082 40 167 Acyl Lipid Metabolism Gene Families AT1G73890 43.478 1.02e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2082 - - gmx:102661004 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2082 2 22987245 22988344 Lja2g2082 2 22987245 22988344 ECH