Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2075 ATGGAAGAAGATGATGATCATCAACCACCCCACATCAAAGGCTTTGTTATCATCTCCCTTCCACCCCCAGATAACCCTTCTCTAGGCAAAACCATCACCGCTTTCACTCTTTCTGATTCTGACCCTCCTTCTTCTCCACCACCACAACGTTCTCTGCAACCCTCTCACCCTGTACCTCAATCACACCCTTCAAATCCTCATCTTCTGTTCTCATTCAGAAGGGTCTTCATCGGTACCCCGATGAAGATCTTTTCTTTCTTTGGGATTCTCCTCTTTGCTGTTTTTCTTTATGGTTCTGTTTTCTCAGCTACCACCTTGGAACTTCATGGTCCTAACAATGAAGATGATGATGGACCCAGTTCGTTTCTCTTCCCTTTGTTTCCTAAAGAGGGTGTTTTGGGGCAGAAGGATTTGAAGCTGAAACTGGGTGATGGTCAAAAAGAGAACTTTGTGACCCAAAGAAATGTTGGTGTTGTTTCTAATTCTAGAGTTGTGGCTGTTGACTCATCCACCGTTTTTCCTGTTAGTGGCAATGTTTATCCAGATGGGTTATATTTCACACTTTTACATGTTGGCAATCCTCCGAAACGTTATTTTCTTGACGTGGATACAGGGAGTGATTTAACTTGGATTCAGTGTGATGCCCCATGCAGAAGTTGTGCTAAGGGAGCACATCTCCTGTACAAGCCAACAAAATCCAATATAGTGCCATCTACGGACTCTATCTGCTCAGAAGTTCAGAAAAATCAGAGGAATGGATATCCTGAAAGTTCCCAACAGTGTGACTATGAAATCCAATACGCAGATCATAGTTCTTCCTTGGGGGTTCTTATTAGAGATGAGCTTCAACTTACGGCTACTAATGGATCCAAAACCAAGTTCAATTTTGTTTTTGGGTGTGGATATGATCAAGCGGGATCACTTTTGAACACATTGTCAAAAACAGATGGAATCATGGGACTTAGCAGGGCAAAAGTTAGCCTACCTTACCAGTTGGCAAGTAAAGGGCTTATTAAGAACGTGGTTGGTCATTGCCTAAGCAGTGATGCAGTTGGCGGTGGGTACATGTTCTTGGGTGATGATTTTGTGCCAAATTGGGGTATGACCTGGGTACCCATGGCCTATACACATTCTTCTGATTTGTACCAAACTGAAATTCTTGGAATAAATTATGGAAATCACCCTCTAAGTTCTGATGGCCACAGCAAAGTAGGAAAGGTGGTTTTTGATAGTGGCAGTTCTTACACATATTTTCCAAAAGAGGCTTACTTGGATCTTGTTGCTTCTCTTAAAGAAGTTTCTGGGCTGCGGCTTATTCAAGACGATTCAGATACAACTTTCCCCATTTGCTGGCAAGATGATTTCCCAATCAGATCTGTCAAAGATGTCAAGGATTTCTTCAAGACCTTAACTCTTCGGTTTGGAAACAAGTGGTGGATTTTGTCTACATTTTTTCAGATACCCCCCGAGGGCTACTTGATTATTAGTAAGAAAGGCAATGTGTGCTTAGCTATACTTGATGGTAGCAATGTACATGATGGATCCTCAATTATACTTGGAGATGTATCATTACGAGGACATTTGGTTGTGTATGACAATGTGAATCAGAGAATTGGTTGGGAGCGAGCAGATTGTGGCATGCCAAGCAGAAGATTAAGAAAGAGTCGTGATTTATTCGCTGATAGCATGTTATAA 1695 0.4195 MEEDDDHQPPHIKGFVIISLPPPDNPSLGKTITAFTLSDSDPPSSPPPQRSLQPSHPVPQSHPSNPHLLFSFRRVFIGTPMKIFSFFGILLFAVFLYGSVFSATTLELHGPNNEDDDGPSSFLFPLFPKEGVLGQKDLKLKLGDGQKENFVTQRNVGVVSNSRVVAVDSSTVFPVSGNVYPDGLYFTLLHVGNPPKRYFLDVDTGSDLTWIQCDAPCRSCAKGAHLLYKPTKSNIVPSTDSICSEVQKNQRNGYPESSQQCDYEIQYADHSSSLGVLIRDELQLTATNGSKTKFNFVFGCGYDQAGSLLNTLSKTDGIMGLSRAKVSLPYQLASKGLIKNVVGHCLSSDAVGGGYMFLGDDFVPNWGMTWVPMAYTHSSDLYQTEILGINYGNHPLSSDGHSKVGKVVFDSGSSYTYFPKEAYLDLVASLKEVSGLRLIQDDSDTTFPICWQDDFPIRSVKDVKDFFKTLTLRFGNKWWILSTFFQIPPEGYLIISKKGNVCLAILDGSNVHDGSSIILGDVSLRGHLVVYDNVNQRIGWERADCGMPSRRLRKSRDLFADSML* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2075 564 PRINTS Pepsin (A1) aspartic protease family signature 407 418 IPR001461 GO:0004190|GO:0006508
Lja2g2075 564 PRINTS Pepsin (A1) aspartic protease family signature 191 211 IPR001461 GO:0004190|GO:0006508
Lja2g2075 564 PRINTS Pepsin (A1) aspartic protease family signature 517 532 IPR001461 GO:0004190|GO:0006508
Lja2g2075 564 PANTHER ASPARTYL PROTEASE APCB1 19 549 - -
Lja2g2075 564 MobiDBLite consensus disorder prediction 1 62 - -
Lja2g2075 564 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 407 418 IPR001969 GO:0004190|GO:0006508
Lja2g2075 564 SUPERFAMILY Acid proteases 176 545 IPR021109 -
Lja2g2075 564 PANTHER ASPARTYL PROTEASES 19 549 IPR001461 GO:0004190|GO:0006508
Lja2g2075 564 ProSiteProfiles Peptidase family A1 domain profile. 185 541 IPR033121 -
Lja2g2075 564 Pfam Xylanase inhibitor N-terminal 185 360 IPR032861 -
Lja2g2075 564 Gene3D Acid Proteases 161 360 IPR021109 -
Lja2g2075 564 Gene3D Acid Proteases 365 547 IPR021109 -
Lja2g2075 564 Pfam Xylanase inhibitor C-terminal 392 541 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2075 Lja-Chr2 22894749 22899797 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2075 167 560 Miscellaneous Gene Families AT1G77480 45.592 7.14e-112 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2075 - - gmx:100810687 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2075 2 22894749 22899797 Lja2g2075 2 22894749 22899797 ECH