Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2065 ATGGAAGCTGCATTATGCAGTTCACTTGCTCTTTCACCCCACCAAGTTTTCAATGCAGCGAATCATGGGGATAAAATGTTTGCTTTCAAATATGGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAGCAGGGAAAGGTGGAGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGAAATTGCGAAAAACATCCCCACCTTACCGAGTATTGCTGCACAATGACAACTACAACAAGCGTGAATATGTGGTGCAAGTGCTGATGAAGGTGATACCAGGAATGACAGTTGATAATGCGGTTAACATCATGCAGGAGGCACACATTAATGGAATGGCAGTTGTCATCATCTGTGCTCAAGTCGATGCCGAAGACCACTGCATGCAGTTGAGAGGAAATGGCCTTTTGAGTTCAATTGAGCCTGCAGATGGTGGGTGTTGA 477 0.4591 MEAALCSSLALSPHQVFNAANHGDKMFAFKYGKDRSVVMTVAATGAGKGGGLLERPTIETTSPGRESEFDLRKLRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPADGGC* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2065 158 Pfam ATP-dependent Clp protease adaptor protein ClpS 76 144 IPR003769 GO:0030163
Lja2g2065 158 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS 1 158 - -
Lja2g2065 158 Gene3D - 75 153 IPR014719 -
Lja2g2065 158 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 1 158 IPR022935 GO:0006508
Lja2g2065 158 SUPERFAMILY ClpS-like 75 152 IPR014719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2065 Lja-Chr2 22699296 22701635 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2065 K06891 - gmx:100785379 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2065 2 22699296 22701635 Lja2g2065 2 22699296 22701635 ECH