Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2046 ATGAATCGCCAGAAATCAATACTCTCATTCTTCCAAAAAACCGCACCGGAGAGTTGCACTTCCGGCAGCCGGCGAGCTCCCACATCGTCGGTCCAGCAACCCAACGGAAATGTCACCACCGCCCCCAAGCCACCTCCGTCGGCTGATGACGTCAGAGGAACCGACACGCCGCCGGAGAAGGTGCCTCGTCAGGTTTTACCGGCAAGCTTCGCGCGAAGTGAGAACAACTCCGGCTCCAACCTGTTTGAGAGTATCATGCATAAATTCGTCAAGGTCGATGACACCGTGAATGTTAGTCAGAGGAGCCATTCATCAAATGACAGTTTCCCCAAACCTTCTCTATCAGGAATATCTATTGATACTAACAGTAAAGGGCTGCAGAAGGAGGAGTCAGCTTTTGAGCCTTTGGTGAAAGTGAAAGACAATGCTTTCAGTTTCAAGGAAAAGCGTAATCTGGAAAAAGTAGCCCCTGTTGAAATAATTGAGGATGATATTACCGGACCGGAAACCCCGGGGATGCAGCCCCTTGCTTCTCATGCAAAGCGAACTCGAGAGGAGGGTTCCAAGTTTTGTTCCTTGCGGGATTCTGGCAAACGAGTCAGGTTCCTTGAGGATTTAAATGCGTTGGACATGACTAAGAAGGAAGCAGAAGTGGCTAGCAAGTTTGAATGGCTTGATCCTTCTCGAATTAGGGACGCCAGCGGGAGAAGGCCTGGTGATCCTTTGTATGACAAGACTACGCTTTATGTTCCTCCAGAAGTTATGAAAAAAATGTCAGCGTCGCAGAAACAGTATTGGAGCATCAAATGTAAATATATGGATGTTGTGCTGTTCTTTAAAGTGGGAAAGTTTTATGAGCTTTATGAAGTGGATGCTGACATTGGCCATAAAGAGCTTTATTGGAAAATCACAATTAGCGGAGTGGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGTTGCTGTTCAAAACCTGGTTGCTCGTGGATATAAGGTGGGACGAGTGGAGCAATTGGAGACATCTGAAGAAGCAAAAGCTAGAGGAGCTAATTCTGTTATTTTGAGAAAATTAGTTCAGGTAGTCACTCCATCAACCGCTGTGGATGGTAACATTGGCCCTGATGCTACTCATCTTCTTGCAATAAAAGAGGGAAACCATGGGTCGGATGATGGCTCAGTTGTGTATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGGTTTTGGGTTGGCTCAATTGACGATGATGCATCCTGTTCTGCTTTGGGTGCTTTATTGATGCAAGTGTCACCCAAGGAAGTTATATATGAAAGCAGAGGATTGTCCAAAGAAGCTCAGAAAGCCCTTAGAAAATTCTCAGGAAATGGTTCCACAACACTATTGACTCCAGTGCAGTCGATCAATGACTTGGTGAACACTGAAATTAATGATTTAATTCTCTCAAAGGGATACTTCAAAGGGTCGTCTGATCCACTGGATCATGTCATGAGCAAAGTGATTCATCGTGAAATCACTTTGTCTGCTCTTGGCGGGCTGATTGGTCATTTGGATAGATTGATGTTAGATGATATCCTACAGAATGGGGATTTATATCCATACCAAGTTTATAAGGCTTGCCTCAAAATGGATGGTCCAACATTGATAAATCTAGAAATCTTTAGCAATAGTGATGATGGTGGCAAATCAGGTACATTGTACAAATATCTTGATAATTGTGTGACTTCCCCCGGAAAGCGGCTTCTTCGGAACTGGATCTGCTGTCCTTTAAAAGACGGCGAAGGAATTAATAACAGGCTTGATGTAGTTGATAATCTAATAGCTTGCCCAGAGATTGTGTCTCATATTGCTCAACATCTTCGCAAGCTTCCAGATTTAGAACTATTGCTGGGTCGAATTAAGTCCACCCTTCAAGTGTCAAGCCCTGTCTTACTGCCCTTGCTGGTCAAGAAAATACTGAAGCAGAGGGTGAAAGTGTTTGGGTCACTTGTGAAAGGCCTTCGGACTGCTTTGAGTTTGTTACTTCTTCTACAGAAAGAACAGCCTCTAATATCATCCTTGAACAAAGTTTTTAAACTTCCAATTCTGACTGGCATTAATGGGCTTGATAAATTTCTTACTCAGTTTGAAGCAGCTGTAGATAGTGACTTTCCAAATTACCTGAACCACAATGTTACAGATTCAGATGCCGAAACACTCACAATACTTACCGAGTTACTTTTGGAGAAAGCTGCTCAATGGTTTGAAGTTGTTAACGCCATCAATTGCATTGATGTACTAAGATCCTTTGCTATGGCTTCTAGTTTTTCATGTGGAACTATGTCTAGGCCTGTCATAGTGCCAAGATCAGAGTGTACAAGTAAAGACAGTGGAGGACCTGTGCTTAAAATGAAGGGACTATGGCATCCATTTGCCCTAGGAGAGAGTGGATGTTTGCCCGTTCCTAATGACATAATCCTTGGTGAGAATGAAGACAGGCGCCATCCTTGTACATTGCTGCTCACTGGACCAAACATGGGTGGAAAGTCAACACTTCTGCGTGCTACATGTCTAGCTGTTATTATGGCCCAGCTAGGATGTTATGTGCCATGTGAAAATTGTGTTATCTCAGTTGTGGATATCATCTTCACTCGGCTTGGAGCCACAGATAGAATCATGGCTGGCGAGAGCACCTTCTTTATTGAGTGTACAGAAACTGCTTCGGTGCTTCAGAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCTGTTTTCCGGCATCTGATTGAGAAAGTTAACTGTCGCTTGCTATTTGCCACGCATTACCATCCACTGACGAAAGAGTTTGCCTCTCATCCTCGTGTGACAATGCAACACATGGCTTGTGCTTTCAAGTCGAAATCCGACACCCTTTCAAAACGTGATCAGGAGCTAGTCTTCCTATATCGGCTTGCCTCCGGAGCATGCCCTGAGAGCTACGGGTTGCAGGTAGCGCTCATGGCTGGAATCCCAGAGAAGACGGTAAACATTGCTTCAAAGGCTAGCCAGCAGATGAAAAAATCAATTGGAAGAACATTCAGGTCAAGTGAACTGAGATCTGAGTTCTCAACTCTTCATGAAGAATGGTTGAAGACCTTGATGTCTATCTCACGAATGGAGGATGGTAAATCTTTTGATGAAGATGTTCTAGATACATTAATCTGTTTGTGGTATGAACTAAAAACTTCATTTAGATCAGGAAACTAG 3276 0.438 MNRQKSILSFFQKTAPESCTSGSRRAPTSSVQQPNGNVTTAPKPPPSADDVRGTDTPPEKVPRQVLPASFARSENNSGSNLFESIMHKFVKVDDTVNVSQRSHSSNDSFPKPSLSGISIDTNSKGLQKEESAFEPLVKVKDNAFSFKEKRNLEKVAPVEIIEDDITGPETPGMQPLASHAKRTREEGSKFCSLRDSGKRVRFLEDLNALDMTKKEAEVASKFEWLDPSRIRDASGRRPGDPLYDKTTLYVPPEVMKKMSASQKQYWSIKCKYMDVVLFFKVGKFYELYEVDADIGHKELYWKITISGVGKCRQVGISESGIDVAVQNLVARGYKVGRVEQLETSEEAKARGANSVILRKLVQVVTPSTAVDGNIGPDATHLLAIKEGNHGSDDGSVVYGFAFVDCARLRFWVGSIDDDASCSALGALLMQVSPKEVIYESRGLSKEAQKALRKFSGNGSTTLLTPVQSINDLVNTEINDLILSKGYFKGSSDPLDHVMSKVIHREITLSALGGLIGHLDRLMLDDILQNGDLYPYQVYKACLKMDGPTLINLEIFSNSDDGGKSGTLYKYLDNCVTSPGKRLLRNWICCPLKDGEGINNRLDVVDNLIACPEIVSHIAQHLRKLPDLELLLGRIKSTLQVSSPVLLPLLVKKILKQRVKVFGSLVKGLRTALSLLLLLQKEQPLISSLNKVFKLPILTGINGLDKFLTQFEAAVDSDFPNYLNHNVTDSDAETLTILTELLLEKAAQWFEVVNAINCIDVLRSFAMASSFSCGTMSRPVIVPRSECTSKDSGGPVLKMKGLWHPFALGESGCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSELRSEFSTLHEEWLKTLMSISRMEDGKSFDEDVLDTLICLWYELKTSFRSGN* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2046 1091 CDD ABC_MSH6_euk 797 1021 - -
Lja2g2046 1091 Gene3D MutS, connector domain 378 544 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 Gene3D - 777 1036 IPR027417 -
Lja2g2046 1091 Pfam MutS domain III 548 765 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 243 1083 - -
Lja2g2046 1091 MobiDBLite consensus disorder prediction 1 38 - -
Lja2g2046 1091 SMART DNAend 562 809 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 Gene3D DNA repair protein MutS, domain I 217 377 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 MobiDBLite consensus disorder prediction 1 77 - -
Lja2g2046 1091 PIRSF Msh6 722 1072 IPR017261 GO:0006298|GO:0030983
Lja2g2046 1091 PIRSF Msh6 3 719 IPR017261 GO:0006298|GO:0030983
Lja2g2046 1091 Pfam MutS domain II 381 524 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 Gene3D - 545 771 - -
Lja2g2046 1091 SUPERFAMILY DNA repair protein MutS, domain I 247 368 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 Pfam MutS domain V 834 1028 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 SUPERFAMILY DNA repair protein MutS, domain III 545 769 IPR036187 -
Lja2g2046 1091 ProSitePatterns DNA mismatch repair proteins mutS family signature. 911 927 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 Pfam MutS domain I 261 371 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 SUPERFAMILY DNA repair protein MutS, domain II 379 557 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lja2g2046 1091 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 243 1083 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lja2g2046 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 791 1030 IPR027417 -
Lja2g2046 1091 SMART mutATP5 830 1026 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2046 Lja-Chr2 22269430 22277893 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2046 K08737 - gmx:100776965 1696.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2046 2 22269430 22277893 Lja2g2046 2 22269430 22277893 ECH