Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1397 ATGGCCTCAATGGGTTCTCTGAAAATGATCTCTTCTTCTCTCAAACTCTCCAACCCAAGTTCCATTCCTCCTAATCAAACCCAAAACCAAGTAGTTTCTAGTCTTAGTCAATCCTTCCCAACCAAAAGTTTCAAAATTTCAGCTTCCCCACAAGTACCTTCAACCAAAAGGAGTTCCAAGAACACCACCACCACTGCATTCTTCTTCAGCAACAACTCAAAGCAGGATCATGATTCTTCAAGGCCTGCCAAAGTTCAAGAACTCTCAGTCTATGAGATCAATGAACGTGATCGTGGAAGTCCTGCATACCTTAGGCTAAGTCAAAAGCCTGTGAACTCTCTTGGAGATTTGGTTCCATTCAGCAACAAACTCTACTCTGGGAACTTGGAAAAGAGATTAGGGATAACAACAGGTTTATGTGTGCTGATCCAAAATGTTCCTGAAAAAAAGGGTGACAGATATGAAGCCATTTACAGCTTCTACTTTGGAGACTATGGCCACATATCAGTGCAAGGAGCTTACCTCACATACCAGGATACATATCTTGCTGTAACTGGAGGCTCTGGAATCTTTGAAGGTGTTTATGGTCAGGTGAAGCTTCAGCAACTTGTGTTCCCATTCAAGCTGTTCTACACCTTCTACTTGAAGGGTATTCCTGATTTGCCTGCTGAGCTTCTAGGGAAGCCTGTTGATCCTTCACCAGATGTTGAGCCTTCTCCTGCTGCTAAAGCTACAGAGCCTCATGCCACTTTACCAAACTTCACCAACTAA 771 0.4332 MASMGSLKMISSSLKLSNPSSIPPNQTQNQVVSSLSQSFPTKSFKISASPQVPSTKRSSKNTTTTAFFFSNNSKQDHDSSRPAKVQELSVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYSGNLEKRLGITTGLCVLIQNVPEKKGDRYEAIYSFYFGDYGHISVQGAYLTYQDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIPDLPAELLGKPVDPSPDVEPSPAAKATEPHATLPNFTN* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1397 256 PANTHER ALLENE OXIDE CYCLASE 4, CHLOROPLASTIC 3 256 IPR009410 GO:0016853
Lja2g1397 256 SUPERFAMILY Allene oxide cyclase-like 84 256 IPR034871 GO:0009695|GO:0046423
Lja2g1397 256 PANTHER ALLENE OXIDE CYCLASE 4, CHLOROPLASTIC 3 256 - -
Lja2g1397 256 Pfam Allene oxide cyclase 81 254 IPR009410 GO:0016853
Lja2g1397 256 MobiDBLite consensus disorder prediction 1 36 - -
Lja2g1397 256 MobiDBLite consensus disorder prediction 229 256 - -
Lja2g1397 256 Gene3D - 70 256 IPR044859 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1397 Lja-Chr2 13409813 13411477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1397 25 256 Acyl Lipid Metabolism Gene Families AT1G13280 61.111 2.63e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1397 K10525 - gmx:100775373 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1397 2 13409813 13411477 Lja2g1397 2 13409813 13411477 ECH