Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1338 ATGGCTGTTTCTGCAATTGGTTTCGAAGGTTACGAGAAGAGGTTGGAAATAACCTTCTTCCCCCCTGGACTTTTTTCTGACCCTGAAGGAAAGGGGCTAAGAGCCCTCACCAAATCCCAGTTGGACGAGATTCTTGCACCCGCTGAGTGCACCATTGTTTCTTCCCTAGCCAATGACGACGTTGACTCTTATGTTCTATCTGAGTCCAGCCTCTTTGTCTATGCCTACAAGATCATTATCAAAACCTGCGGCACTACCAAGCTACTGCTTGCAATCCCACCTATCTTGAAATTGGCTGAGTTCGTTTCTCTTAATGTGAAATCCGTGAGGTACACCCGAGGAAGTTTCATTTTTCCTGGTGCTCAGTCTTTCCCTCATCGCAGCTTTTCTGAGGAAGTAGCAATCCTGGATGGTTACTTTGGCAAGCTAGGGTCTGGCAGCTCTGCTTATATCATGGGTGGTTCCGACAGCGAACAGAAATGGCATGTTTACTCTGCCTCTGCCGAATCCGTGAGGCCATGCGACTCTGTTTACACACTAGAGATGTGCATGACTGGCTTAGATAGAGAGAAGGCACAGGTTTTCTACAAAGACCAATCTGGTTCAGCTGCCATGATGACTGTCAATTCCGGTATCAGAAACATCCTTCCAAACTCTCAGATATGCGATTTTGACTTTGAACCTTGTGGTTACTCAATGAATTCTGTGGAAGGAGATGCTGTTTCTACCATTCATGTTACTCCAGAAGACGGTTTTAGCTATGCAAGCTTTGAAACAGTGGGGTACAATTTGAAAGCTGTGGATCTGAAAGAATTGGTGGTGAGGGTGTTGGCATGTTTTGAACCATCTGAGTTTTCTATTGCTGTTCATGCTGACAATGCAAGCAGGTCATTTGAGCAAGGCTGTGTACTGGATCTTAAAGGATACGGTTGCGAAGAGAGGAGCCTCGAGGGGCTTGGAATGGGTGGTTCAGTTGTCTACCAAAAGTTTGTGAAGACGGCTTCTGAATGTGGCTCTCCTAGATCAACTCTCAAGTGCTGGAAAGATGATTCTGAAGAAGAGTAG 1065 0.4592 MAVSAIGFEGYEKRLEITFFPPGLFSDPEGKGLRALTKSQLDEILAPAECTIVSSLANDDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAEFVSLNVKSVRYTRGSFIFPGAQSFPHRSFSEEVAILDGYFGKLGSGSSAYIMGGSDSEQKWHVYSASAESVRPCDSVYTLEMCMTGLDREKAQVFYKDQSGSAAMMTVNSGIRNILPNSQICDFDFEPCGYSMNSVEGDAVSTIHVTPEDGFSYASFETVGYNLKAVDLKELVVRVLACFEPSEFSIAVHADNASRSFEQGCVLDLKGYGCEERSLEGLGMGGSVVYQKFVKTASECGSPRSTLKCWKDDSEEE* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1338 354 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE 1 354 IPR001985 GO:0004014|GO:0006597|GO:0008295
Lja2g1338 354 Gene3D - 69 333 - -
Lja2g1338 354 TIGRFAM SAM_DCase: S-adenosylmethionine decarboxylase proenzyme 8 333 IPR001985 GO:0004014|GO:0006597|GO:0008295
Lja2g1338 354 PIRSF SAM_decarbox_euk 1 336 IPR001985 GO:0004014|GO:0006597|GO:0008295
Lja2g1338 354 ProSitePatterns S-adenosylmethionine decarboxylase signature. 63 73 IPR018166 GO:0004014
Lja2g1338 354 Gene3D - 1 68 - -
Lja2g1338 354 Pfam Adenosylmethionine decarboxylase 7 330 IPR001985 GO:0004014|GO:0006597|GO:0008295
Lja2g1338 354 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME 2 1 354 - -
Lja2g1338 354 SUPERFAMILY S-adenosylmethionine decarboxylase 11 332 IPR016067 GO:0004014|GO:0008295
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1338 Lja-Chr2 12805688 12806752 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1338 K01611 - gmx:547981 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1338 2 12805688 12806752 Lja2g1338 2 12805688 12806752 ECH