Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1336 ATGGGCGATGTTTTGGATTTGGACTTGATCAGTAACCTCCCTCCAAGCATCATAGAGAGGATTCTGGTACAGCTTCCAATAAGAGATGTAGTCAGAACTAGCATGTTGTCTAGTACATGGAGGTACAAATGGTGGATTCTTCACCTTTCAAGGAATGAAATCAAGGAGTTGATCCTTGAATTAGGAGCAGGTGAATTTTATAGAGCACCTTCCTGCCTTTTCAATTGTAAGAAATTGACTTACTTGGACCTTTCGCGCTGTGAGTTGGATCCACCTCCTAGTTTTAAGGGATTCATGTGTTTAAAATGCCTCACACTTCATCAAGTGTTTATATCTCGTGATGCAATTCAGAGCCTCATTTCCAATTGCCCTCTCTTGGAGGGTTTATCACTGTCATACTTTGATAGTCCAGCTCTTACTATCCGTGCTCCGAACCTCAAGTACTTGTATCTTGGAGGTGAATTCAAGGATATATGTCTTGACGATACACCACTTCTGGTTGAAATATATCTAGCTATGTATATGACTGATGACATTGCTGATCACTTTGAGCAGAGCTCAGTTGGGGTGCCTAATCTTGAGAAGTTTGTTGGGCTTATCGACTTTACAAAGTATTTGAGCAAAGGTCCAAGACATCTTCCAATAATGTACAAGAAATTGGAGACTATTGAACTGGATCAAGTAAGTTTTGAGGTTATGAAGGAGATACTTGCTGTCATTCGTTTGATTACAAGCTCTCCCAATCTAAAGAAACTTCAAATTTTAGTTTCATCAATCATACATAATGTCACAGATGCGCCAGATTTGGGCTTTTGGGAAAAGGAATGCCCTCATGAAGCAACACTCAGACAGCTTAAAGTTGTGAAGTTAACAGGAATATGTGGTGTGCCACATGAGATGGAATTTATCAAATTTTTGCTTGGCTGTTCACCTGTGCTTGAGACAATGATGATCACTTCTTCTGCATTTGACATTTTAGTTCAATTGAAAATTTCGGTCGAAATGTTGGAGTTTAGAAGAGCTTCTCCTAGAGCAGAAATTATTTTTGTACCCGAGTAA 1059 0.3938 MGDVLDLDLISNLPPSIIERILVQLPIRDVVRTSMLSSTWRYKWWILHLSRNEIKELILELGAGEFYRAPSCLFNCKKLTYLDLSRCELDPPPSFKGFMCLKCLTLHQVFISRDAIQSLISNCPLLEGLSLSYFDSPALTIRAPNLKYLYLGGEFKDICLDDTPLLVEIYLAMYMTDDIADHFEQSSVGVPNLEKFVGLIDFTKYLSKGPRHLPIMYKKLETIELDQVSFEVMKEILAVIRLITSSPNLKKLQILVSSIIHNVTDAPDLGFWEKECPHEATLRQLKVVKLTGICGVPHEMEFIKFLLGCSPVLETMMITSSAFDILVQLKISVEMLEFRRASPRAEIIFVPE* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1336 352 PANTHER - 8 44 - -
Lja2g1336 352 PANTHER - 46 324 - -
Lja2g1336 352 Gene3D Ribonuclease Inhibitor 43 331 IPR032675 -
Lja2g1336 352 ProSiteProfiles F-box domain profile. 7 41 IPR001810 GO:0005515
Lja2g1336 352 Pfam F-box domain 10 42 IPR001810 GO:0005515
Lja2g1336 352 SUPERFAMILY RNI-like 46 258 - -
Lja2g1336 352 PANTHER F-BOX PROTEIN-LIKE 8 44 - -
Lja2g1336 352 SMART 9598neu4hmm 279 350 IPR006566 -
Lja2g1336 352 PANTHER F-BOX PROTEIN-LIKE 46 324 - -
Lja2g1336 352 SUPERFAMILY F-box domain 6 47 IPR036047 GO:0005515
Lja2g1336 352 Pfam FBD 282 318 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1336 Lja-Chr2 12786991 12788304 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1336 - - lja:Lj2g3v1196660.1 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1336 2 12786991 12788304 Lja2g1336 2 12786991 12788304 ECH