Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1335 ATGGGTGATGTTTTGGGTCCTGACTCGATCAGTGACCTTCCTCAAAGCATTATAGAGAGCATTCTGGTTAAGCTTCCAATAAGAGATGCTGTGAAAACTAGCATTTTGTCTAGCAAATGGAGGTACAAATGGGCTTCCATGTCTCACCTCGTGTTTGACGAGAAGTCTGTACCTTCGTGTAATGACCGAGAGGTTGCTGAGCAAAGTTTCGTCAAGTTCATTGCCGGCACGCTATTTCTTCACCAAGGATCAATTCATAAGTTCCAAATTACAAATCCGAACTTGCAGACCTGCCCTGAAATAGATCAGTGGATTCTTTTCCTATCAAGGAATGATATCAAGGAATTGATCCTTGAATTAGGAGAAGGTGAATTTTTTAGAGTGCCATCCTGCCTTTTTAACTGTAAGAAGTTGACTCGCTTGGAGGTTTCGCGCTGTGAGTTGGATCCGCCTCTTAGTTTTAAGGGATTCATGTATTTAAAATGTCTTAACCTTCATCAAGTGTTGATATCCCCTGATGCAATTCAGAGCCTCATTTCCAATTGCCCTCTGTTGGAGAGTTTGTCATTGTCATATGTTGATAGTTTAGCTCTTACTGTCCGCGCTCCGAACCTCAAGCACTTGTGCCTTGAAGGTGAATTCAAGGATATATGTCTTGAAGATACACCACTTTTGGTTGAGATATATCTTGCTATGTATATGACTGATGACATTGCTGAGCAATTTGAGCAAAGCTCAAAATGCAATTTTGTCAAGTTTCTTGGTGGTGTGCCTAATCTTGAGAAGCTTGTTGGGCTTATCGACTTCACAAAGTATTTGAGCATAGGCAATGACCCAAGGCCGCGTCCAATAATGTACAACAAATTGGAGACTATTGAATTGTATCAAGTAAGTTTTGAGGATATGAAGGAGATACTTGTTGTCCTTCGCTTGATTACAAGCTCTCCCAATCTAAAGGAACTTCAAATTTCAGGCTCATCAAACATACCTACTGCCATAGATACCCCGGATTTGGATTTCTGGGAAAAGGAGTGTCCCTCAAATGCTACACTTAGACAACTTAAAGTTGTGAAGTTAACAGAAATGTGTGGTGTGCCACATGAGATGGAATTTATCAAATTTTTGCTTGGTTGTTCACCTGAGCTTGAGACAATGATGATCACTTCTTCTGCATATGACATGGAAATTCAATTGAAAATGTTGATCGAATTGTTGAAATTTCGAAGAGCTTCTACTAGAGCAGAAATTGTTTTTGTCCATGAGTAA 1266 0.4005 MGDVLGPDSISDLPQSIIESILVKLPIRDAVKTSILSSKWRYKWASMSHLVFDEKSVPSCNDREVAEQSFVKFIAGTLFLHQGSIHKFQITNPNLQTCPEIDQWILFLSRNDIKELILELGEGEFFRVPSCLFNCKKLTRLEVSRCELDPPLSFKGFMYLKCLNLHQVLISPDAIQSLISNCPLLESLSLSYVDSLALTVRAPNLKHLCLEGEFKDICLEDTPLLVEIYLAMYMTDDIAEQFEQSSKCNFVKFLGGVPNLEKLVGLIDFTKYLSIGNDPRPRPIMYNKLETIELYQVSFEDMKEILVVLRLITSSPNLKELQISGSSNIPTAIDTPDLDFWEKECPSNATLRQLKVVKLTEMCGVPHEMEFIKFLLGCSPELETMMITSSAYDMEIQLKMLIELLKFRRASTRAEIVFVHE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1335 421 SUPERFAMILY RNI-like 98 330 - -
Lja2g1335 421 SMART fbox_2 13 53 IPR001810 GO:0005515
Lja2g1335 421 PANTHER - 5 393 - -
Lja2g1335 421 ProSiteProfiles F-box domain profile. 7 41 IPR001810 GO:0005515
Lja2g1335 421 PANTHER F-BOX PROTEIN-LIKE 5 393 - -
Lja2g1335 421 Gene3D Ribonuclease Inhibitor 89 407 IPR032675 -
Lja2g1335 421 SUPERFAMILY F-box domain 6 88 IPR036047 GO:0005515
Lja2g1335 421 SMART 9598neu4hmm 348 419 IPR006566 -
Lja2g1335 421 Pfam FBD 352 387 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1335 Lja-Chr2 12767443 12769520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1335 8 214 EF-hand Containing Proteins AT5G41840 24.896 1.74e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1335 - - gmx:100781833 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1335 2 12767443 12769520 Lja2g1335 2 12767443 12769520 ECH