Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1177 ATGTCGAGCTTCACTCACGCCACCACACTCCTCCATGCTCACATTAAAACCAAGCAAAGAAACACTTCCAAATCTACCAACCCTTTACCTCTTATTAACAACCAAGCACCATTTTCTGCTGAACACAACAATGATACAACCAGCAGAAGAAAATTGATTTCAACATTTCTTACCACTTCAACAGCAGTGCTAGTAGCAGGAGGAGTTTATGGCGGTGGTGTACCGCCTCCGGCACTAGCGGAGAAGTGGGGGACACGTTCTTTCTTGAAGGAGCATTTCTTTGAGCCAGGGCTTTCCCCTGAAGATGCAGTGGAGAGGATAAAGCAAACTGCTGAGGGGCTGCATAGTATGAGGGACATGTTGGAGAGCATGTCTTGGAGGTATGTCATGTTCTACATTCGATTGAAGCAGTCCTATCTTGACCAGGATTTGAAAAATGCTATCACTACTCTGCCTGAGAATCGCAAGAAGGAGTATGTTAAGACTGCTAATGACTTGGTGGACAACATGGCTGAGCTTGATCGGCATGTTCGGTCGCCAAAGGTATATGAATCGTACCTATACTACGAGAGGTTACTGAAATCAATAGATGAACTTGTAGCTATTTTAGCATAG 615 0.4472 MSSFTHATTLLHAHIKTKQRNTSKSTNPLPLINNQAPFSAEHNNDTTSRRKLISTFLTTSTAVLVAGGVYGGGVPPPALAEKWGTRSFLKEHFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYLDQDLKNAITTLPENRKKEYVKTANDLVDNMAELDRHVRSPKVYESYLYYERLLKSIDELVAILA* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1177 204 MobiDBLite consensus disorder prediction 13 44 - -
Lja2g1177 204 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 77 204 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Lja2g1177 204 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 1 204 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Lja2g1177 204 SUPERFAMILY Oxygen-evolving enhancer protein 3, 93 204 IPR023222 -
Lja2g1177 204 Gene3D - 71 203 IPR023222 -
Lja2g1177 204 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC 1 204 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1177 K08901 - gmx:100807480 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1177 2 11177629 11179882 Lja2g1177 2 11177629 11179882 ECH