Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1161 ATGTCAACACCCATTCTCCAATTGACTTCACTTCCTCCCACAAAACACAACAACACAGAACCACCTCCAAGAATCGAAGCTGCTTCTACACTTGCACTAGAATCTTTACCTCACCTCATCTCCCTCATTCCCAAATGCACCTCTCTTAGGGAGCTCAAGCAAATTCAAGCTCACACCATCAAGACCCACCTCCAGAATGACACCAATGTCCTCACCAAGCTCATAAATTTCTGCACTTCCAACCCCACCACAGCTTCTATGGAACATGCCCACCATCTGTTCGACAAAATTCCTCAACCAGATATTTTTCTTTTTAACTCATTGGCACGTGGGTATGCCCGTTCTGATGACCCTTTTAAAGCAATCATTCTGTTTTCTCGCGTGTTGTGCTCGGGCCTCCTTCCGGATGATTACACATTCTCCTCCCTACTCAAGGCGTGTTCGAGGGTTAAGGCCTTGCAGGAAGGTAAACAGCTGCATTGCCTTGCTTTCAAACTGGGGGTAAGTGATAACATGTATGTGTCCCCAACACTCATAAACATGTATACTGCCTGTGATGACATTGATGCTGCTAAAAGGGTCTTTGGTAAGATCGATGAACCGTGTGTTGTTGCATATAATGCAATCATTACTAGCTGTGCTAGGAAGAGTCAGCCCACTGAGGCATTGGCTTTGTTTAGAGAATTGCAGGAGGCTGGTCTTAAGCCGACTTATGTCACCATGCTTGTCGTGCTTTCGTCCTGTGCTTTGCTAGGAGCGTTGGACTTGGGGAGGTGGATCCATGAGTATGTTAAGAAGTATGGGTTTGATCAATACGTGAAGGTAAATACTGCACTTATAGATATGTATTCTAAATGCGGGAGTTTGGATGATGCTGTTAAAGTGTTCAGGAGCATGGATAGGAGAGACACACAGGCGTGGTCGGCGATGATTGTTGCTTATGCAACACATGGACATGGTTCCCAAGCTATGTCATTGTTGGAAGAAATGAAGAAGGAAAAAGTGCAGCCTGATGAGATAACTTTTTTAGGTATATTATATGCATGCAGTCACAATGGATTGGTCGAGGAAGGTTATGAGTATTTTCGTAGTATGACTCATGAGTACGGGATTGTTCCTAGTATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGACGCTTGGATGAAGCATATAAATTCATAGATGAATTACCAATCAAGCCCACACCAATTCTGTGGAGGACATTGCTATCTGCTTGTAGCAGTCATGGCAATGTTGAAATGGGGAAACAAGTAATGCAGAGAATCTCTGAACTGGACGATTCTCATGGTGGTGATTATGTTCTTTTGTCAAACTTGTGTGCAAGATCTGGAAGATGGGATGATGTGAGTCACTTAAGGAGAATGATGATAGACAAAGGAGCAGGGAAAATTCCTGGGTGTAGTTCTATAGAGGTTAACAATGTCGTTCATGAATTCTTCTCTGGGGATGGAGTTCATTTCACTTCTTCTGTATTACACCATGCGCTTGATGAGTTGGTAAAGGAATTGAAGCTGGCTGGGTATGTACCTGACACATCTCTAGTCTTTCATGCAGGCATGGAAGATGAAGAGAAAGAAATGATTCTTAGGTATCACAGTGAGAAATTGGCTATTACTTTTGGGTTGCTGAATACTCCCCCTGGAACAACAATTCGTGTGGTCAAGAACCTTAGAGTTTGTGTTGATTGCCATAATGCTGCTAAATTTATATCATTGATCTTTGGTAGGCAAATTATTCTCAGAGATGTCCAGCGATTTCATCATTTCAAAGATGGGAAATGCTCTTGTGGGGAATACTGGTAG 1836 0.4314 MSTPILQLTSLPPTKHNNTEPPPRIEAASTLALESLPHLISLIPKCTSLRELKQIQAHTIKTHLQNDTNVLTKLINFCTSNPTTASMEHAHHLFDKIPQPDIFLFNSLARGYARSDDPFKAIILFSRVLCSGLLPDDYTFSSLLKACSRVKALQEGKQLHCLAFKLGVSDNMYVSPTLINMYTACDDIDAAKRVFGKIDEPCVVAYNAIITSCARKSQPTEALALFRELQEAGLKPTYVTMLVVLSSCALLGALDLGRWIHEYVKKYGFDQYVKVNTALIDMYSKCGSLDDAVKVFRSMDRRDTQAWSAMIVAYATHGHGSQAMSLLEEMKKEKVQPDEITFLGILYACSHNGLVEEGYEYFRSMTHEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSSHGNVEMGKQVMQRISELDDSHGGDYVLLSNLCARSGRWDDVSHLRRMMIDKGAGKIPGCSSIEVNNVVHEFFSGDGVHFTSSVLHHALDELVKELKLAGYVPDTSLVFHAGMEDEEKEMILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGEYW* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1161 611 PANTHER BNAA02G26650D PROTEIN 31 597 - -
Lja2g1161 611 SUPERFAMILY TPR-like 266 439 IPR011990 GO:0005515
Lja2g1161 611 Pfam E motif 420 482 IPR046848 -
Lja2g1161 611 MobiDBLite consensus disorder prediction 1 15 - -
Lja2g1161 611 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 597 - -
Lja2g1161 611 Pfam PPR repeat family 201 248 IPR002885 -
Lja2g1161 611 Pfam PPR repeat family 303 349 IPR002885 -
Lja2g1161 611 Pfam PPR repeat 277 302 IPR002885 -
Lja2g1161 611 Pfam PPR repeat 378 401 IPR002885 -
Lja2g1161 611 Pfam PPR repeat 104 132 IPR002885 -
Lja2g1161 611 Pfam DYW family of nucleic acid deaminases 518 611 IPR032867 GO:0008270
Lja2g1161 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Lja2g1161 611 TIGRFAM PPR: pentatricopeptide repeat domain 204 237 IPR002885 -
Lja2g1161 611 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Lja2g1161 611 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Lja2g1161 611 TIGRFAM PPR: pentatricopeptide repeat domain 277 303 IPR002885 -
Lja2g1161 611 MobiDBLite consensus disorder prediction 1 22 - -
Lja2g1161 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Lja2g1161 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Lja2g1161 611 Gene3D Tetratricopeptide repeat domain 199 267 IPR011990 GO:0005515
Lja2g1161 611 Gene3D Tetratricopeptide repeat domain 33 198 IPR011990 GO:0005515
Lja2g1161 611 Gene3D Tetratricopeptide repeat domain 273 526 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1161 Lja-Chr2 11036087 11037922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1161 39 611 Glycoside Hydrolase AT3G49170 39.415 4.21e-144 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1161 - - gmx:100817794 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1161 2 11036087 11037922 Lja2g1161 2 11036087 11037922 ECH