Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1143 ATGTGCACTGCTCTGACGCGATGCTCTCACGCCAACGCTCTCTTCAGACCTCTCACCATGCCCAAACCCCGCAATTCGCACCTTCACCTCTCATCTTCATCCGCCATCAACAACAAAGGATCAGGATCAAGATATGATGCATTGCTGTTGGATGCTGGAGGCACCCTCTTGCAATTGGCCAACCCAGTTGAGGACACCTACGCCGCCATTGGAGCCAAATATGGTTTGCATCTGAGTCCTTCTGAGATCAAACAAGGGTTTAAGAGAGCATTTTCTGCTCAATGGCCTCAAAAGCTACGTTACCAGGGAGATGGGAGGCCATTTTGGAAATTTGTGGTTTCTGAAGCCACTGGTTGTGGAAATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCATGGCATCTTCCAGATGGAGCTCATGAAGCAATTACTCTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCCAATTTCGACTCCCGCTTAAGGAATCTATTGAAGGATCTTGATGTTTTAAATCTATTCGATGCTGTCATTATATCATCAGAGGTTGAATATGAAAAACCAGACCCAAGAATATTTCAAGCAGCTCTAGATCAACTAAATGTAGAGGCTTCCAAAGCCATACACATTGGAGATGATGAAAAGGCAGATAAATTCGGTGCGAATGCTGTGGGGATAGATTGCTGGTTATTGGGTACTGATGTGAAGACATTCTCTGAGATACACATCCGCATCCTTAACTCACAGGCATAA 774 0.4432 MCTALTRCSHANALFRPLTMPKPRNSHLHLSSSSAINNKGSGSRYDALLLDAGGTLLQLANPVEDTYAAIGAKYGLHLSPSEIKQGFKRAFSAQWPQKLRYQGDGRPFWKFVVSEATGCGNEDYFEEVYEYYAKGDAWHLPDGAHEAITLLKDAGVKMAVVSNFDSRLRNLLKDLDVLNLFDAVIISSEVEYEKPDPRIFQAALDQLNVEASKAIHIGDDEKADKFGANAVGIDCWLLGTDVKTFSEIHIRILNSQA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1143 257 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 148 232 IPR006439 -
Lja2g1143 257 Pfam Haloacid dehalogenase-like hydrolase 120 235 IPR041492 -
Lja2g1143 257 CDD HAD_dREG-2_like 144 253 - -
Lja2g1143 257 SUPERFAMILY HAD-like 45 245 IPR036412 -
Lja2g1143 257 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 48 237 IPR011949 -
Lja2g1143 257 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 146 231 IPR006439 -
Lja2g1143 257 PANTHER F14L17.7 PROTEIN 2 256 - -
Lja2g1143 257 Gene3D - 49 241 IPR023214 -
Lja2g1143 257 Gene3D - 61 133 IPR044924 -
Lja2g1143 257 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 85 98 IPR006439 -
Lja2g1143 257 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 45 56 IPR006439 -
Lja2g1143 257 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 199 219 IPR006439 -
Lja2g1143 257 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 181 197 IPR006439 -
Lja2g1143 257 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 151 164 IPR006439 -
Lja2g1143 257 PANTHER - 2 256 - -
Lja2g1143 257 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 45 241 - -
Lja2g1143 257 SFLD Haloacid Dehalogenase 45 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1143 Lja-Chr2 10920678 10923999 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1143 - - lja:Lj2g3v1280040.1 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1143 2 10920678 10923999 Lja2g1143 2 10920678 10923999 ECH