Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1129 ATGTTGGACGGCCGTTCCTGTGTTGTTCCGAGGATGTTTTCTAGCTCTTGCCAGACAGAGAACAACTGGTCTTACATGAAGGACTATTTGCTGGATTTGGATATCAAAAATGGAAAGCGCCCTATGGAAATTGATGCTGAAGGGGAGCCTCAACCGAGGAAATGCACCAAGATGTTAGATTCTTGCCAGGAAGTTGAGATTGCTCGAGTTTTGTTTCGACAACAATCGCTTCAGGGTAAGGATTCTGTTGTTCCTCAAATGGATTCTGAGCAGGACAACCAGCTTGATGGTGATTCGATGGATTCTGATGTTCAGCAGCTGCTACATGCTGAAATATTTTTGAGTGCTAGTGACCAGAATCAACAGCAGCACCAAGCTGGGGATTCATCGGATTCTGGTTCCCTTTTGCCGCGGATGAACCGGGACAGCTCAATAGCCTGCCTCAGCCGCTGTTCGAGGTCCGACTATGGTTCCCTTGCCTCCCTTAACCGGAGTTTCCAGAACATCATCCGGAGTGGGGAGCTCTATAAATGGAGGAGACTAAATGACATCATAGAACACTGGATTTACTTCTCCTGTGCCCTCCTTGAATGGGAAGCCTATGATCCGAATCGCCAGAGGTGGATGCACTTGCCAAGGATGGCTTCTAATGGGTGTTTCATGTTTTCAGACAAGGAATCTTTAGCTGTAGGGACCGAACTACTTGTGTTCGGGAGGGAGCTGAGGTCCCATGTGATTTACAGATACAGCCTCTTGACAAACTCATGGTCTTCTGGAATGAGAATGAATTTTCCAAGGTGCTTGTTTGGCTCTGCAAGCCTTGGAGAGATTGCGATTTTAGCCGGTGGGTGTGATTCAGAGGGCCATATTCTTGACTCTGCTGAACTGTACAATTCAGAGTCCCAAACATGGGAAACACTCCCAAATATGATAAAACCAAGGAAGATGTGTTCTGGAGTGTTTATGGATGGGAAATTCTATGTTATAGGTGGAATTGGGGGAAGTGATTCCAAGCTTCTTACTTGTGGAGAGGAGTATAATTTGCAGACAAGAACATGGACTGAGATTCCCAACATGTCCCCGGGACGGAGTACTCGAGGGTCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTTGTTGCTGTTGTGAATGATGAATTGTATGCTGCTGATTATGCTGACATGGAGGTTAAGAAATATAACAAGGACAGGAAAGTGTGGTTAACCATTGGGAGGCTGCCGGAACGCGCGGTGTCGATGAATGGTTGGGGACTTGCATTCAGGGCTTGTGGGGATAGGCTCATTGTGATTGGTGGACCAAGGACTCATGGTGAGGGTTTCATTGAACTCAATTCATGGGTGCCTAGTGAGGGACCTCCACAATGGCGTCTACTAGCTCGAAAACGTTCCGGTAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA 1449 0.4727 MLDGRSCVVPRMFSSSCQTENNWSYMKDYLLDLDIKNGKRPMEIDAEGEPQPRKCTKMLDSCQEVEIARVLFRQQSLQGKDSVVPQMDSEQDNQLDGDSMDSDVQQLLHAEIFLSASDQNQQQHQAGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFQNIIRSGELYKWRRLNDIIEHWIYFSCALLEWEAYDPNRQRWMHLPRMASNGCFMFSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWSSGMRMNFPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSESQTWETLPNMIKPRKMCSGVFMDGKFYVIGGIGGSDSKLLTCGEEYNLQTRTWTEIPNMSPGRSTRGSEMPATAEAPPLVAVVNDELYAADYADMEVKKYNKDRKVWLTIGRLPERAVSMNGWGLAFRACGDRLIVIGGPRTHGEGFIELNSWVPSEGPPQWRLLARKRSGNFVYNCAVMGC* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1129 482 Pfam Kelch motif 265 310 IPR006652 GO:0005515
Lja2g1129 482 Pfam Kelch motif 313 360 IPR006652 GO:0005515
Lja2g1129 482 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 482 - -
Lja2g1129 482 SUPERFAMILY Kelch motif 195 479 IPR015915 GO:0005515
Lja2g1129 482 Gene3D - 181 475 IPR015915 GO:0005515
Lja2g1129 482 SMART kelc_smart 277 324 IPR006652 GO:0005515
Lja2g1129 482 SMART kelc_smart 325 373 IPR006652 GO:0005515
Lja2g1129 482 SMART kelc_smart 233 276 IPR006652 GO:0005515
Lja2g1129 482 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 482 - -
Lja2g1129 482 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1129 Lja-Chr2 10796143 10798949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1129 142 358 EF-hand Containing Proteins AT4G39560 25.346 2.17e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1129 - - gmx:100818865 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1129 2 10796143 10798949 Lja2g1129 2 10796143 10798949 ECH