Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1126 ATGGATTCCGGTGGTGGATACACTGTAGAAGTCACAGGTCTCTCACCCAATGCCACTGAAAAAGATGTCCATGACTTCTTTTCTTTCTCTGGTGCCATTCAGCATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACAGCTTATGTTACCTTTAAAGATGCATATTCTCAAGAAACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGGAACTATGAAGATGCATACGATTTTTGGAACCGGCCCTCTTATAGTCATGAAGAGGAGAGAACTTCAACTACACCGCATAGTAATCAATTTGTTTCCTCTGCTGGAGAAGCAGTCACTGTGGCTCAAGAAGTCGTGAAGACCATGTTAGCAAAAGGATATGTTCTCAGTAAAGATGCATTAACAAAGGCTAAAGACTTTGACGAGTCCCATCAGGTTTCTGCCACTGCAACCGCAAAGGTTTCTGAACTGAGCCGGAGAATTGGCCTCAGTGAAAAGATATCAGCAGGTGTTGAAGCTGTTAAATATGTGGATCAGATGTATAATGTCTCTGGAACAACCAAGGCAGCTGCTTCCGCGACAGGAAGATCAGTAGCGTCGGCTGCAAGCACTGTGGTCAATAATAGCTATTTTTCAAAGGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTCAAGTTACTTCTGATTTGGGTACTCGTGGTGGCAGGCAGTAA 738 0.4472 MDSGGGYTVEVTGLSPNATEKDVHDFFSFSGAIQHVEIIRSGDYACTAYVTFKDAYSQETACLLSGATILDQRVCITRWGNYEDAYDFWNRPSYSHEEERTSTTPHSNQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALTKAKDFDESHQVSATATAKVSELSRRIGLSEKISAGVEAVKYVDQMYNVSGTTKAAASATGRSVASAASTVVNNSYFSKGALWVSGALTRAAQVTSDLGTRGGRQ* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1126 245 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 244 - -
Lja2g1126 245 Gene3D - 2 84 IPR012677 -
Lja2g1126 245 CDD RRM_Vip1_like 9 77 IPR034360 -
Lja2g1126 245 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lja2g1126 245 SUPERFAMILY RNA-binding domain, RBD 2 95 IPR035979 GO:0003676
Lja2g1126 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Lja2g1126 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Lja2g1126 245 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 4 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1126 Lja-Chr2 10741934 10744590 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1126 - - gsj:114378905 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1126 2 10741934 10744590 Lja2g1126 2 10741934 10744590 ECH