Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1117 ATGAAGAGTAATATAACAGTGACAAAACTAGTCACAGATGGATTCTACAGAGAAGCACTTCACCTCTTCTCCCACCTCCACTCTTCTTCTCCCCACCCACTTCACCCCTTCACCTTCCCCCCTCTCCTCAAAGCCTGCGCCAATCTCCCCTCCCCTACCCACACCCAAATCCTCCATGCCCATCTCCTCAAAACCGGCCTCCGATCCCTCCCTCACACTTCCACAGCCCTCACCACCGCCTACGCCGCCACCCCTTCCGACGCACTCAAATCATTCGACGAATTGCCTCAACCATCTCTCGCTTCCTTCAACGCCGCACTCTCCGCCCTCGCCCCTAACGGACAAGCCCTCAGCCTCTTCACCCGTATAGGGCTTCGCATTCTCATGCCCAACTCTGTCACCATCGCGACGTTGCTCACCGCACGTGACGTCGGCCCCATCCACGTGCCCCAGGTGCATTGCTGCGCAAGCAAGCTTGGGGTTCTATCTGATGTATACGTTGCCACCTCGCTTGTTACTGCTTATTTGAGATTTGGGGTTTTGGTTTCTGCTGGTAAGGTGTTTGATGAATTGCCTGTGAGGAATGTGGTGAGTTACAATGCTTTCATGTCTGGGTTGTTGCAGAATGGAGCTCCTCGTCTTGTCTTTGATGTGTTTAAGGACATGATGAGGAGTTTCGAAAACGAGCCGAATTCGGTGACGTTGGTGTCGGTTCTTGCTTCGTGTGCCACGCTTTCGTGCGTGCGTCAAGTTCACGGGCTTGTTGTGAAGCTTGAAGCGGGTGATGAGGTTATGGTGGTGACTACGCTCGTGGATATGTATTCCAAGCGTGGTTGTTGGCATTCGGCTTTCGATGTCTTCGTTGACACGGAAAGAAGGAATGTGGTCACTTGGAACTCTATGATTTCGGGGATGTTGATGAATGGGGAGTGTGAGAAGGCTGTTGCTGTGTTTCAGAGGATGGAGTGTGAAGGGGTGTTGCCTAATTCAGCAACTTGGAACATCATGATCAATGGGTTTTCACAGCAAGGGGTGTGTGTGGAAGCTTTTAAGTACTTTAGGAAAATGCAGTCTGCTGGTGTGGCTCTGCGTTTGAAAACTCTCACTGCTATCTTGTCAGTGTGTGCAGATTCTTCTGTGTTGCCAAGTGGGAAAGAGATTCATGGGTATGCTTTGAGGGCTGATGTTGATAGGGATGATTTTCTGGCAACTGCCGTGGTTGATATGTACATGAAATGTGGACATGCTTCTTGGGCAAGAAGGTTTTTTGATCAGTTTGGTGCAAAACCAGATGACCCGGCATTTTGGAATGCAATGATAGGAGGGTATGGAAGGAATGGTGACTACGAGTCTGCTTTTGAAATCTTTGATCAAATGCTAGCAGAAGGGGTTCAACCAAACAGTGTAACATTTGTTAGTGTCCTATCTGCTTGTAGCCATAGTGGTCAGATTGAGAGAGGATTGCATGTTTTTAGAATGATGAGTAGAGAGTATGGCTTGCAGCCAAAGCCTGAGCATTTTGGTTGCTTGGTGGATCTTTTAGGTCGATCTGGTCAGTTAGATGAAGCGCGTGATTTGGTGCAAGAATTAGCAGAGGCTCCTGTATCTGTTTTTGCTTCATTGCTTGGTGCAAGTAAGTGCTACCTGAATTCCAATCTTGGGGAAGAAATGACGAGGAAGCTTCTGGATATAGAACCAGATAACCCAGCTCCTCTGGTAATCTTGTCTAACATATATGCTGGGCTGGGAAGGTGGAAGGAAGTAGAAAGGATAAGAGGGATCATCACAGATAAAGAATTGGATAAAATCTCTGGCTTTAGCATGATAGAAGTTGCAGGATAA 1842 0.4821 MKSNITVTKLVTDGFYREALHLFSHLHSSSPHPLHPFTFPPLLKACANLPSPTHTQILHAHLLKTGLRSLPHTSTALTTAYAATPSDALKSFDELPQPSLASFNAALSALAPNGQALSLFTRIGLRILMPNSVTIATLLTARDVGPIHVPQVHCCASKLGVLSDVYVATSLVTAYLRFGVLVSAGKVFDELPVRNVVSYNAFMSGLLQNGAPRLVFDVFKDMMRSFENEPNSVTLVSVLASCATLSCVRQVHGLVVKLEAGDEVMVVTTLVDMYSKRGCWHSAFDVFVDTERRNVVTWNSMISGMLMNGECEKAVAVFQRMECEGVLPNSATWNIMINGFSQQGVCVEAFKYFRKMQSAGVALRLKTLTAILSVCADSSVLPSGKEIHGYALRADVDRDDFLATAVVDMYMKCGHASWARRFFDQFGAKPDDPAFWNAMIGGYGRNGDYESAFEIFDQMLAEGVQPNSVTFVSVLSACSHSGQIERGLHVFRMMSREYGLQPKPEHFGCLVDLLGRSGQLDEARDLVQELAEAPVSVFASLLGASKCYLNSNLGEEMTRKLLDIEPDNPAPLVILSNIYAGLGRWKEVERIRGIITDKELDKISGFSMIEVAG* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1117 613 Pfam PPR repeat family 435 479 IPR002885 -
Lja2g1117 613 Pfam PPR repeat family 293 341 IPR002885 -
Lja2g1117 613 Pfam PPR repeat family 194 243 IPR002885 -
Lja2g1117 613 Pfam E motif 548 610 IPR046848 -
Lja2g1117 613 PANTHER OS07G0578800 PROTEIN-RELATED 8 607 IPR045215 GO:0003723|GO:0009451
Lja2g1117 613 Gene3D Tetratricopeptide repeat domain 427 601 IPR011990 GO:0005515
Lja2g1117 613 Gene3D Tetratricopeptide repeat domain 3 145 IPR011990 GO:0005515
Lja2g1117 613 TIGRFAM PPR: pentatricopeptide repeat domain 296 329 IPR002885 -
Lja2g1117 613 TIGRFAM PPR: pentatricopeptide repeat domain 436 467 IPR002885 -
Lja2g1117 613 TIGRFAM PPR: pentatricopeptide repeat domain 469 502 IPR002885 -
Lja2g1117 613 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Lja2g1117 613 TIGRFAM PPR: pentatricopeptide repeat domain 332 361 IPR002885 -
Lja2g1117 613 Gene3D Tetratricopeptide repeat domain 256 388 IPR011990 GO:0005515
Lja2g1117 613 Gene3D Tetratricopeptide repeat domain 151 252 IPR011990 GO:0005515
Lja2g1117 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 502 IPR002885 -
Lja2g1117 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 230 IPR002885 -
Lja2g1117 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Lja2g1117 613 Pfam PPR repeat 507 530 IPR002885 -
Lja2g1117 613 SUPERFAMILY TPR-like 428 587 IPR011990 GO:0005515
Lja2g1117 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Lja2g1117 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Lja2g1117 613 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 8 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1117 Lja-Chr2 10589354 10591195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1117 35 612 Glycoside Hydrolase AT3G49170 26.387 1.27e-61 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1117 - - gmx:100809263 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1117 2 10589354 10591195 Lja2g1117 2 10589354 10591195 ECH