Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1116 ATGGCGCAAGCACAAGAGGTCAGAAGTAGCCCCACACTTTCAAAGAGTGATGCCTACTTTGAAACCGTGCAATCCAGAAAGAAACTATCACAGACATTGCAGGATTCGTTGACAGATGCATTTGCAAAGATTCCTGTTTCTTCTTTTCCAGCAGTTCCAACAGGAAAAGTGATTGAAATTCTGGCGGACACACCCGTCGGTGAAGCTGTTAAGATTCTATCTGAAAGCAACATTTTAGCAGCTCCAGTTAAAGACCCAGATGCAAGAGCTAGTTCAGATTGGAGAGACAGGTATCTTGGCATCATAGATTATTCGGCTATCATTCTCTGGGTGCTGGAGAGTGCAGAACTTGCAGCAGCTGCCCTATCAGCTGGTACAGCAACAGCTGCTGGAGTTGGCGCAGGAACTGTTGGTGCTTTGGGAGCACTAGCATTGGGAGTGACAGGTCCTGCTGCAATTGCTGGGTTAACCGCTGCTGCAGTAGGTGCTGCAGTGGCTGGTGGTGTTGCTGCAGATCAAACGATGGCTAAAGATGCTCCTCAGGCTGCTGATAACCTGGGTGAGGACTTCTACAAAGTAATACTGCAAGAAGAACCCTTCAAATCAACCACGGTGCGAACAATACTTAAATCATATCGATGGGCACCTTTTATTCCAGTTGCAAGAAATAGTGCTATGTTGACTGTCATGCTGCTTCTGTCAAAGTATAGGCTGAGGAATGTGCCTGTGATAGAACCAGGTAAACCTGACATTATAAACTTCATTACTCAGTCTGCAGTTGTCCAAGGTCTTGAGGGATGCAAAGGAAGAGATTGGTTTGACTGCATTGCAGAAAGGCCTATATCTGATCTGGGACTTCCATTTACATCTGCTGATAAGGTTATTAGCATCCAGAGCAATGAATTGATTCTCGAAGCTTTCAAGCTCATGAGGGATAATCGAATCGGTGGTCTTCCTGTAATAGAGGGGCCAACGAAGAGAATTGTTGGAACCTTAAGCATAAGAGATATCAGATATTTGCTGCTAAAGACTGAACTTTTCTCCAATTTTAGGAAGCTCACTGTTATGGATTTCATTACGAAAATTGCCTCTGCATCCCTACAAGCTGGAAAAGTTACTCGGCCTATAACATGCAAGCCTGACTCCACACTGCAGAGCGTGATCCATACTCTTGCTTCTCAGTCTATTCACAGGATTTATGCAGTAGATGAACATGAAAAAGTAGTCGGAGTCATTACACTGAGAGATGTCATCTCTTGTTTCATCACCGAACCTGCTTACCATTTTGACGATTACTATGGATTCGCAGTGAAAGAGATGTTGAATCAGTGA 1332 0.4437 MAQAQEVRSSPTLSKSDAYFETVQSRKKLSQTLQDSLTDAFAKIPVSSFPAVPTGKVIEILADTPVGEAVKILSESNILAAPVKDPDARASSDWRDRYLGIIDYSAIILWVLESAELAAAALSAGTATAAGVGAGTVGALGALALGVTGPAAIAGLTAAAVGAAVAGGVAADQTMAKDAPQAADNLGEDFYKVILQEEPFKSTTVRTILKSYRWAPFIPVARNSAMLTVMLLLSKYRLRNVPVIEPGKPDIINFITQSAVVQGLEGCKGRDWFDCIAERPISDLGLPFTSADKVISIQSNELILEAFKLMRDNRIGGLPVIEGPTKRIVGTLSIRDIRYLLLKTELFSNFRKLTVMDFITKIASASLQAGKVTRPITCKPDSTLQSVIHTLASQSIHRIYAVDEHEKVVGVITLRDVISCFITEPAYHFDDYYGFAVKEMLNQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1116 443 Gene3D - 275 424 IPR046342 -
Lja2g1116 443 ProSiteProfiles CBS domain profile. 371 431 IPR000644 -
Lja2g1116 443 SUPERFAMILY CBS-domain pair 38 261 IPR046342 -
Lja2g1116 443 Gene3D - 50 267 IPR046342 -
Lja2g1116 443 Pfam CBS domain 373 419 IPR000644 -
Lja2g1116 443 Pfam CBS domain 292 342 IPR000644 -
Lja2g1116 443 PANTHER BNAANNG38820D PROTEIN 8 442 - -
Lja2g1116 443 CDD CBS_pair_SF 292 418 - -
Lja2g1116 443 ProSiteProfiles CBS domain profile. 288 348 IPR000644 -
Lja2g1116 443 CDD CBS_pair_SF 56 108 - -
Lja2g1116 443 ProSiteProfiles CBS domain profile. 51 117 IPR000644 -
Lja2g1116 443 SUPERFAMILY CBS-domain pair 274 430 IPR046342 -
Lja2g1116 443 SMART cbs_1 374 422 IPR000644 -
Lja2g1116 443 SMART cbs_1 293 342 IPR000644 -
Lja2g1116 443 SMART cbs_1 216 265 IPR000644 -
Lja2g1116 443 SMART cbs_1 56 112 IPR000644 -
Lja2g1116 443 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1116 Lja-Chr2 10586671 10591086 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1116 - - gmx:100800376 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1116 2 10586671 10591086 Lja2g1116 2 10586671 10591086 ECH