Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1109 ATGTCAACCGTTGCACTGGAGCCTCTGTTCTTCCACCTTCGCCGGAGAGAAACTCCGATTCACCTTTCCAAACAGAACCCATTCAGACCCTTCTTTCTCATCAGCGCCTCTTCTAACCTCAACCTCAATCTCAATGCCTCCTTCACCTTCCGCCAACCCCGCATGCCTGCACTTGCTGCTTCCCTTACAGACACACCTATCATCGACCCCCTTCAATGCTCTGACACCTTCTTCACCAACACTTTCCCAATCAACACAACCCAAACGGTGGAGGGAAAGGTTTTTGTGAGACTGGATCACAGGAAGGATTTGAGAGACTTGGAGCTTACAGTGAGTTGCAATCTACCTGGAAAATGGATTCTTCACTGGGGAGTTACCCATGGTGATGATGTTGGAAGGGAATGGGATCAACCTTCTCATGATATGATACCCCCTGGATCTGTTTCTATTAAGGACTGTGCAATAGAGACACCCTTGATGAAGTCATTGTTATCTACTGAAAGCGATACATTTCATGAAGTCAGGATTGATCTCAAACCCAACAATGAAATTTCAGCAATTAATTTTGTTCTCAAGGATGAGGAATCTGGAGCTTGGTATAGAAACCAAGGAAGAGATTTCAGGGTTCCTTTGGTCAACTACCTTAAGGCAGATACTAATATGATTGGAACTAAAAGAGGCTTTAGTTTATGGCCAGAGAATTTAGGGCAGATGCCTAAAATGTTCCTCAAGTCAAAATCAGGTCAGGATGGTAGCAGCAAAACCAGAGATCCAAAACAAGAAAATACTCAACCAGAAGGTTTCTATGTAGAAATTCCTATTACAAAGGAGGTTTCAATTAATAACTTCATCCGTGTCTCAATTAAGAAATGCTTTGAGTCTGAGGCAGTTAAGAACCTTTTATGTTTGGAAACGGATCTACCTGGAGATATTGTTCTTCACTGGGGAGTTTGCAGGGATGATTCAAGAAAGTGGGAAGTTCCACCTGCCCCTTATCCGCCAGAAACAATAACATTTAAAGACAAATCTTTGAGAACTCGATTACAGCCAAGAGGCAGTGGAAAAGGATCTTCAGTACTAATCACTTTAGGAGAAGAGTTTTCAGGGTTTCTTTTTGTTCTTAAGCAAAATGAAAAGACTTGGTTCAAGCAAATGAGAAACGACTTCTATATCCCCCTCTCAAGTTCAGGTAGCTTGCCTATTGATGGCAACAGGGAGGATCAATCAGGTGTGCAGAGGGAAGCGGCTGAAGAGGCAAGTCAAGGGACTTCTTTCTTTTCATTTACTGATGGAATTATCAATGAAATAAGGAATTTGGTGACAGACAATTCCTCTGAGAAAAGTAGAAAGACAAAATCCAAAAAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAGACTGGCTGCGGAAGCCTATATTTTCTTCAAAACCTCCATTCCATATTTCTCAGAGGCAACTATTGCAGAACCTGAAGCACCTATTGCGGAACCTGAAGCTGCATCTGAATCAGAGGCACTGGCTCTGGATCCAGAAATATGCTCAGGGACAGGCACCGGATATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATAAAACTGGAAGATGGTACATGGAGCTTAAGGAGAAAGCTTCAGAACTAGCATCACTTGGTTTTACTGTGGTTTGGCTACCACCACCTACAGAGTCTGTGTCTCCTGAAGGATACATGCCAAAGGATTTATATAATTTGAATTCCAGATATGGGAACACTGATGAACTGAAAGATTTGGTGAAACGACTTCATCAAGTTGGCATTAGAGCTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTGTCAGAATCAGAATGGTATTTGGAACATATTTGGAGGTCGTCTTAACTGGGATGACTGTGCAGTTGTTGCTGATGATCCACATTTTCAGGGGAGGGGTAACAACAGTAGTGGAGATAATTTTCATGCTGCTCCAAACATTGATCACTCACAGGAATTTGTGAGAAAGGATCTCAAAGAATGGTTATGCTGGTTGAGGAATGAAATTGGGTATGATGGATGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTACATAAAGGACTACCTGGATGCAAGTGAACCTTACTTTGCTGTCGGAGAATACTGGGATTCCCTTAGTTATACATATGGTGAAATGGATTGTAATCAAGATGCTCATAGGCAGAGGATAGTTGACTGGATCAAAGCCACCAATGGTACAGCTGGTGCATTTGATGTTACAACAAAAGGGATTCTGCACTCTGCACTGGAAAGATGTGAATATTGGAGGTTGTCAGATCAGCAGGGAAAACCCCCTGGTGTTGTAGGGTGGTGGCCATCTCGTGCTGTTACTTTTATAGAGAATCATGACACTGGCTCTACCCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGGAAGGATATGCTTACATTCTTACTCATCCAGGAACCCCATCAGTGTTTTTTGACCACATTTTCTCTCATTATAAAAATGAAATAGCAAGTCTTGTATCTTGCAGGAAGAGGAACAAGATCCACTGCAGGAGTACAGTTCAAATTTGTAAAGCAGAAAGGGATGTTTATGCAGCCATGATTGATGAAAAAATTGCTATGAAGATTGGACCTGGACATTTTGAACCACCTACTGGCTCCCACAGATGGTCCTTAGCAATTGGGGGAAGAGACTATAAGATTTGGGAAGCATTATAA 2739 0.4221 MSTVALEPLFFHLRRRETPIHLSKQNPFRPFFLISASSNLNLNLNASFTFRQPRMPALAASLTDTPIIDPLQCSDTFFTNTFPINTTQTVEGKVFVRLDHRKDLRDLELTVSCNLPGKWILHWGVTHGDDVGREWDQPSHDMIPPGSVSIKDCAIETPLMKSLLSTESDTFHEVRIDLKPNNEISAINFVLKDEESGAWYRNQGRDFRVPLVNYLKADTNMIGTKRGFSLWPENLGQMPKMFLKSKSGQDGSSKTRDPKQENTQPEGFYVEIPITKEVSINNFIRVSIKKCFESEAVKNLLCLETDLPGDIVLHWGVCRDDSRKWEVPPAPYPPETITFKDKSLRTRLQPRGSGKGSSVLITLGEEFSGFLFVLKQNEKTWFKQMRNDFYIPLSSSGSLPIDGNREDQSGVQREAAEEASQGTSFFSFTDGIINEIRNLVTDNSSEKSRKTKSKKAQESILQEIERLAAEAYIFFKTSIPYFSEATIAEPEAPIAEPEAASESEALALDPEICSGTGTGYEILCQGFNWESHKTGRWYMELKEKASELASLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNTDELKDLVKRLHQVGIRALGDAVLNHRCAHCQNQNGIWNIFGGRLNWDDCAVVADDPHFQGRGNNSSGDNFHAAPNIDHSQEFVRKDLKEWLCWLRNEIGYDGWRLDFVRGFWGGYIKDYLDASEPYFAVGEYWDSLSYTYGEMDCNQDAHRQRIVDWIKATNGTAGAFDVTTKGILHSALERCEYWRLSDQQGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMEGYAYILTHPGTPSVFFDHIFSHYKNEIASLVSCRKRNKIHCRSTVQICKAERDVYAAMIDEKIAMKIGPGHFEPPTGSHRWSLAIGGRDYKIWEAL* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1109 912 SUPERFAMILY Glycosyl hydrolase domain 855 910 - -
Lja2g1109 912 Gene3D - 855 911 IPR013780 -
Lja2g1109 912 SMART aamy 521 850 IPR006047 GO:0005975
Lja2g1109 912 MobiDBLite consensus disorder prediction 243 267 - -
Lja2g1109 912 PANTHER ALPHA-AMYLASE 81 911 - -
Lja2g1109 912 Pfam Alpha amylase, catalytic domain 548 801 IPR006047 GO:0005975
Lja2g1109 912 SUPERFAMILY (Trans)glycosidases 520 838 IPR017853 -
Lja2g1109 912 Pfam Alpha-amylase C-terminal beta-sheet domain 852 910 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lja2g1109 912 Gene3D Glycosidases 521 854 - -
Lja2g1109 912 SMART alpha-amyl_c2 851 911 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lja2g1109 912 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 81 911 - -
Lja2g1109 912 CDD AmyAc_arch_bac_plant_AmyA 522 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1109 Lja-Chr2 10516640 10522901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1109 1 910 Glycoside Hydrolase AT1G69830 60.583 0.0 1142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1109 K01176 - gmx:100810333 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1109 2 10516640 10522901 Lja2g1109 2 10516640 10522901 ECH